Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00432 ATGGACACGAAATTGTTAACAATCCGTACACTGGTCTCCTCCCTCACTTCCTCCTCCGACCAAACCCGTCTCGCCGCCCTCCGCCACCTCCGCCGCACCTCCAACGAGGACCCCGCCTCCCGCACCATCATCTCCGCCGCCGGCGCCGTCCCCCTCCTCGCCGCCGCGCTCTACTCCCCCTCCCACCCCATCCAAGACGACGCCGCCGCCACCCTCCTCAACCTCTCCATCTCCGACCGCCGCCCCCTGCTCTCCTGCCCCGCCCTCCTACCTTCCCTCGCCCACGTCCTCTCCCGCCACGCCACCTCCTCCGCCCCATCCGCCGTCCAATCCGCCGCCGCCACCCTCCACAGCCTCCTCGCCGTGGTAGCCGAGTTCCGCCCCACCGTCGGTGCAAAACCGGAGATTCTCCGTGCCCTCATCAGTATAATCAGCGATCCCGATTCGCTGACGAGGACGATCAAGGATGCTCTGAAAGCATCGTTCGGAATTGCACTCTACCGGCCGAGCCGAACCGCACTGGTCCGGCTGGGCGCCGTTCCCGTGCTCTTCGGTCTGGTGGCGAAGGACAAGGACGGGAAGAGAAAAGTTGGCATAATCGAGGATGCGACGGCGGTGATCGCGCAGATTGCGGCGTGCGAGGAGAGCGAGGACGCGTTTCTTAAGGTTTCGGGGGTTTCTAGGTTGGCCATGATGCTGTGTTCCGAAAGTGGAAACTGTAGTTTGAGGACAAAGGAGAATGCTGTTGCGGCGTTGTTGAATCTCGTGAGATATGGGAGTGAGAGAGTGGTTGGAGAGGTTAAGAACAAGGTTGGGGCTTTGGATGGAATCTCCTACGTGCAGGAACACGGTAGCCCCAAAGGGAAGAGCAAAGCCGTCGCATTTTTCAAGCTTCTGCTTGATGGTGGAAGCAGTGGTGAAATTGCTCAAGATTTGTACCCGGTTCACTCTGATTCCGGTTCAAGCCGCTAG 972 0.606 MDTKLLTIRTLVSSLTSSSDQTRLAALRHLRRTSNEDPASRTIISAAGAVPLLAAALYSPSHPIQDDAAATLLNLSISDRRPLLSCPALLPSLAHVLSRHATSSAPSAVQSAAATLHSLLAVVAEFRPTVGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVGALDGISYVQEHGSPKGKSKAVAFFKLLLDGGSSGEIAQDLYPVHSDSGSSR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00432 323 Pfam Armadillo/beta-catenin-like repeat 44 76 IPR000225 GO:0005515
Viun1g00432 323 SMART arm_5 37 77 IPR000225 GO:0005515
Viun1g00432 323 SMART arm_5 167 212 IPR000225 GO:0005515
Viun1g00432 323 SMART arm_5 213 257 IPR000225 GO:0005515
Viun1g00432 323 SUPERFAMILY ARM repeat 7 300 IPR016024 -
Viun1g00432 323 Gene3D - 3 297 IPR011989 -
Viun1g00432 323 PANTHER U BOX DOMAIN-CONTAINING 8 299 - -
Viun1g00432 323 FunFam ARM repeat superfamily protein 2 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00432 Viun-Chr1 3304851 3306225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00432 8 299 U-box Gene Family AT1G23030 28.669 8.65e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00432 - - gmx:100803111 464.151