Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00428 ATGCATGAGGCAGCATGTTTAGACTTGATGGATCAGTATCAGGTTGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCATTCACGCAAAAATTGAGAGGCCATACGTGTGTGTTGTTGATGATTGTCAGGCAAGTTACCGACGAAAGGATCACCTGACTCGACACGTTTTACAGCATCAAGGGAAGACATTTAAATGCCCTGTTGAGAATTGCAGCACCGAGTTCTCTTTGCAAAGCAATGTGAAACGGCATGTTGAGGAGGTCCATGATGACAATTCTACCTCTACCTGTGACAGAACTCACAAGCAGCACACATGTCCAGAAATTGGCTGTGGAAAGGTTTTCAGATTTGCATCGCAGCTACGAAAGCATGAAGATTCTCATGTTAAACTGGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGAAGCATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTAAAGTCCTCCCATCAATACATTACCTGTGAAACTTGTGGTACTAAGCAACTAAAGAAGAATATTAAACGTCACCTTCTTACACATGAACCTCTCAATTCACCAGAGACCTTTCGATGTGAGTTCAAGGGTTGTAGCTGCACATTTTCAAGAAAATCTAATCTTGATAAGCATAACAAGGTTGTTCACTTCAAGGAAAAACCTTATGTGTGCGGGTTTGCTGATTGTGGCATGAGGTTTGCTTACAAACATGTGCGAGATAACCATGAGAAAACTGCAAAACATGTTTTTACCCTTGGTGATTTTGAAAAGACTGATGAAGAATTGAGGTCAAAATGTAGGGGAGGGAGGAAGAGGAAATGTCCTAGTGTTGAAATGATACTTAGGAACAGGGTTACCCCTCCGAGTCAATTGGAGAGTTTGTTATTCATGCAGGATAGTGAGTAG 918 0.427 MHEAACLDLMDQYQVGRPPVKLHQGCLIHAKIERPYVCVVDDCQASYRRKDHLTRHVLQHQGKTFKCPVENCSTEFSLQSNVKRHVEEVHDDNSTSTCDRTHKQHTCPEIGCGKVFRFASQLRKHEDSHVKLESVDVVCLEPGCMKHFTNVQCLQAHVKSSHQYITCETCGTKQLKKNIKRHLLTHEPLNSPETFRCEFKGCSCTFSRKSNLDKHNKVVHFKEKPYVCGFADCGMRFAYKHVRDNHEKTAKHVFTLGDFEKTDEELRSKCRGGRKRKCPSVEMILRNRVTPPSQLESLLFMQDSE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00428 305 ProSitePatterns Zinc finger C2H2 type domain signature. 197 220 IPR013087 -
Viun1g00428 305 SUPERFAMILY beta-beta-alpha zinc fingers 63 91 IPR036236 -
Viun1g00428 305 Gene3D Classic Zinc Finger 63 102 - -
Viun1g00428 305 SUPERFAMILY beta-beta-alpha zinc fingers 177 233 IPR036236 -
Viun1g00428 305 Gene3D Classic Zinc Finger 191 279 - -
Viun1g00428 305 Gene3D Classic Zinc Finger 103 187 - -
Viun1g00428 305 ProSitePatterns Zinc finger C2H2 type domain signature. 107 129 IPR013087 -
Viun1g00428 305 ProSitePatterns Zinc finger C2H2 type domain signature. 139 162 IPR013087 -
Viun1g00428 305 ProSitePatterns Zinc finger C2H2 type domain signature. 228 252 IPR013087 -
Viun1g00428 305 PANTHER ZINC FINGER PROTEIN 27 296 - -
Viun1g00428 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 225 IPR013087 -
Viun1g00428 305 SMART c2h2final6 165 186 IPR013087 -
Viun1g00428 305 SMART c2h2final6 195 220 IPR013087 -
Viun1g00428 305 SMART c2h2final6 105 129 IPR013087 -
Viun1g00428 305 SMART c2h2final6 36 60 IPR013087 -
Viun1g00428 305 SMART c2h2final6 137 162 IPR013087 -
Viun1g00428 305 SMART c2h2final6 226 252 IPR013087 -
Viun1g00428 305 SMART c2h2final6 65 90 IPR013087 -
Viun1g00428 305 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Viun1g00428 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 95 IPR013087 -
Viun1g00428 305 Pfam Zinc finger, C2H2 type 105 129 IPR013087 -
Viun1g00428 305 Pfam Zinc finger, C2H2 type 36 60 IPR013087 -
Viun1g00428 305 ProSitePatterns Zinc finger C2H2 type domain signature. 38 60 IPR013087 -
Viun1g00428 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 65 IPR013087 -
Viun1g00428 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 134 IPR013087 -
Viun1g00428 305 Gene3D Classic Zinc Finger 33 62 - -
Viun1g00428 305 ProSitePatterns Zinc finger C2H2 type domain signature. 67 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00428 Viun-Chr1 3240695 3242779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00428 32 255 C2H2 Transcription Factor Family AT1G72050 49.275 2.22e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g00428 zf-C2H2 0.002 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00428 K09191 - gmx:100801812 483.026