Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00425 ATGGGTGAAGCCATGGAAGCTGAAGAAAGGCCCAAAATCAGAGATATCAGACGCTATTTCTGCGAGTTCTGCGGTATCTGCAGGTCCAAGAAAACCCTCATCACCTCTCACGTCAATTCACAGCACAGGGAGGAGATCGAAAAGGCAAGAGCTGAAAGAGAAAGAGAACCCGAAACTGAGGCTGTGAAATCCAACACTTGCGGCGAATGTGGTGCCAGTTTCAAGAAACACGCTTATTTGGTGCAGCACATGCAAAGCCATTCGCTTGAGAGGCCATACGTGTGTGTTGTTGATGATTGTCAGGCAAGTTACCGACGAAAGGATCACCTGACTCGACACGTTTTACAGCATCAAGGGAAGACATTTAAATGCCCTGTTGAGAATTGCAGCACCGAGTTCTCTTTGCAAAGCAATGTGAAACGGCATGTTGAGGAGGTCCATGATGACAATTCTACCTCTACCTGTGACAGAACTCACAAGCAGCACACATGTCCAGAAATTGGCTGTGGAAAGGTTTTCAGATTTGCATCGCAGCTACGAAAGCATGAAGATTCTCATGTTAAACTGGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGAAGCATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTAAAGTCCTCCCATCAATACATTACCTGTGAAACTTGTGGTACTAAGCAACTAAAGAAGAATATTAAACGTCACCTTCTTACACATGAACCTCTCAATTCACCAGAGACCTTTCGATGTGAGTTCAAGGGTTGTAGCTGCACATTTTCAAGAAAATCTAATCTTGATAAGCATAACAAGGTTGTTCACTTCAAGGAAAAACCTTATGTGTGCGGGTTTGCTGATTGTGGCATGAGGTTTGCTTACAAACATGTGCGAGATAACCATGAGAAAACTGCAAAACATGTTTTTACCCTTGGTGATTTTGAAAAGACTGATGAAGAATTGAGGTCAAAATGTAGGGGAGGGAGGAAGAGGAAATGTCCTAGTGTTGAAATGATACTTAGGAACAGGGTTACCCCTCCGAGTCAATTGGAGAGTTTGTTATTCATGCAGGATAGTGAGTAG 1089 0.438 MGEAMEAEERPKIRDIRRYFCEFCGICRSKKTLITSHVNSQHREEIEKARAEREREPETEAVKSNTCGECGASFKKHAYLVQHMQSHSLERPYVCVVDDCQASYRRKDHLTRHVLQHQGKTFKCPVENCSTEFSLQSNVKRHVEEVHDDNSTSTCDRTHKQHTCPEIGCGKVFRFASQLRKHEDSHVKLESVDVVCLEPGCMKHFTNVQCLQAHVKSSHQYITCETCGTKQLKKNIKRHLLTHEPLNSPETFRCEFKGCSCTFSRKSNLDKHNKVVHFKEKPYVCGFADCGMRFAYKHVRDNHEKTAKHVFTLGDFEKTDEELRSKCRGGRKRKCPSVEMILRNRVTPPSQLESLLFMQDSE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00425 362 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Viun1g00425 362 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Viun1g00425 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Viun1g00425 362 Pfam Zinc finger, C2H2 type 162 186 IPR013087 -
Viun1g00425 362 Pfam Zinc finger, C2H2 type 66 87 IPR013087 -
Viun1g00425 362 Pfam Zinc finger, C2H2 type 93 117 IPR013087 -
Viun1g00425 362 SUPERFAMILY beta-beta-alpha zinc fingers 73 125 IPR036236 -
Viun1g00425 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 191 IPR013087 -
Viun1g00425 362 SMART c2h2final6 222 243 IPR013087 -
Viun1g00425 362 SMART c2h2final6 194 219 IPR013087 -
Viun1g00425 362 SMART c2h2final6 65 87 IPR013087 -
Viun1g00425 362 SMART c2h2final6 19 42 IPR013087 -
Viun1g00425 362 SMART c2h2final6 93 117 IPR013087 -
Viun1g00425 362 SMART c2h2final6 252 277 IPR013087 -
Viun1g00425 362 SMART c2h2final6 162 186 IPR013087 -
Viun1g00425 362 SMART c2h2final6 122 147 IPR013087 -
Viun1g00425 362 SMART c2h2final6 283 309 IPR013087 -
Viun1g00425 362 ProSitePatterns Zinc finger C2H2 type domain signature. 95 117 IPR013087 -
Viun1g00425 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 122 IPR013087 -
Viun1g00425 362 PANTHER ZINC FINGER PROTEIN 7 353 - -
Viun1g00425 362 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Viun1g00425 362 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Viun1g00425 362 SUPERFAMILY beta-beta-alpha zinc fingers 120 148 IPR036236 -
Viun1g00425 362 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Viun1g00425 362 Gene3D Classic Zinc Finger 119 158 - -
Viun1g00425 362 Gene3D Classic Zinc Finger 159 244 - -
Viun1g00425 362 Gene3D Classic Zinc Finger 248 336 - -
Viun1g00425 362 SUPERFAMILY beta-beta-alpha zinc fingers 234 290 IPR036236 -
Viun1g00425 362 Gene3D Classic Zinc Finger 5 93 - -
Viun1g00425 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Viun1g00425 362 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Viun1g00425 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 152 IPR013087 -
Viun1g00425 362 Gene3D Classic Zinc Finger 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00425 Viun-Chr1 3240136 3242779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00425 89 312 C2H2 Transcription Factor Family AT1G72050 49.275 3.24e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g00425 zf-C2H2 0.0025 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00425 K09191 - gmx:100801812 607.06