Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00423 ATGAAAATCCCGTGTTGTTCGGTTTGCCAAACGCGTTACAACGAGGAGGAGAGAGTTCCTCTTCTGCTGCAATGTGGCCACGGCTTCTGCAGAGAGTGTCTCTCTAGAATGTTCGCACCCTCTTCGGACGCTACGCTGGCATGTCCCAGGTGCCGACACGTGTCCACTGTGGGAAACTCCGTTCAGGCTCTGCGGAAGAACTACGCGGTGCTCGCGCTGCTCCACTCCGCCACCACCGTCGCCAACGGCGGCGTCGGGAGAGGAGGAGGTGGAGGGGCCAATTTCGACTGCGACTACACCGATGACGAGGAGGAGGACGGAGGCGGGGAGGAGGATGAGGACGACGAGAAGCGTCGTCGGAACAGCCGCGAGTCGCAGGCGTCCAGCTCTGGCGGGTGCGAGCCGGTGATCGAGGTCGGTGGCGGCGCGCACCAGGACCTGAAGTTGGTGCGGCGGATTGGAGAGGGGAGGAGGGCGGGAGTGGAGATGTGGATGGCGGTGATCAGCGGTGGAGTGGAAGGAGGACGGAGGTGCCGGCACAGCGTGGCAGTGAAGAAGGTGACGGTGGTGGAGGGGATGGATTTGGATTGGGTTCAGGGTAAGTTAGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTGTGCACTTTCCATGGGACAATGAGGGTGGAGGACAGTTTGTGCCTCGTGATGGATAAGTGCTATGGATCGGTTCAGTCCGAGATGCAGCGCAATGAGGGAAGGCTCACTTTAGAACAAGTCCTAAGATACGGGGCTGACATTGCCCGAGGGGTCGTTGAACTTCATGCTGCAGGCGTTGTTTGCATGAATTTAAAACCATCCAATCTTCTTCTTGACGCAAATGGTCATGCCGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCACGACCAGAGTGTGACTCTGTAAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACAGCACCAGAGGCTTGGGAACCTGTGAAGAAATCGTTAAATTTGTTTTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTTCCATTCCTTGGGCAGGTTTAAGTGCGGAGGAAATCTATCGAGCGGTTGTTAAAGCTAAGAAGCTGCCTCCACAGTATGCTAGTGTGGTTGGAGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCTATGCTGGCAATATTTCTCCGCCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAATAAGGGTTCTGTATCAACTGTGATGGAGCCTTCACCTATACCTGAATTGGAAGTTCCTCAGGAAAACCCTAACCATCTTCATCGACTTGTATCTGAAGGAGATACTGCAGGTGTTAGAGATCTTCTTGCAAAGGCTGTATTAGAAAATGGCAGCAACTACCTAACATCGTTATTGGAAGCTCAAAATGCTCATGGACAAACAGCTCTCCACTTAGCTTGTAGACGGGGCAGTGCAGAACTTGTCGAGACAATTTTGGAGTATAGAGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCCTTAGCAGCTGGGTCCCTAGAATGTGTTCGTAGCCTTGTCAAAAGAAATGCTAATGTGCAGTCAAGATTGAGAGATGGTTTTGGTCCATCTGTAGCTCACGTTTGTGCCTATCATGGCCAGCCAGATTGTATGCGAGAATTACTATTAGCCGGAGCTGATCCTAATGCGGTGGATGATGAAGGTGAATCTGTTCTGCATAGAGCAATTTCCAAGAAGTACACAGACTGTGCACTTGTAATACTGGAGAATGGAGGCTGTAAATCAATGTCCATTGTGAATTCAAAGAACCTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTGAAGAGATGGGCGGAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCATTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAGAAAGAGGGCAGAGAACTGGTGCAGATACTGCTTGCAGCTGGAGCTGATCCTTCTGCTCAAGATTCACAAAATGGGAGGACAGCATTGCATACGGCTGCTATGACTAATGATGTCGACCTGGTTCAGGTTATTCTGGCTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATTCCTCTTCACTTGGCCTTAGCTAGGGGTGCTAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGAGCAAATTTTAATTTGCAGGATGACGACGGTGACAACGCTTTCCATATAGCAGCTGAGACAGCAAAAATGGTTCGTGAAAATCTGAACTGGCTTGTTATTATGCTAATGCATCCTGATGCTGATATTGAAGTCAGAAACCACAGTGGCAAGACGCTACGTGACATTTTGGAGGCTCTCCCCCGAGAATGGTTATCCGAAGATCTGGTGGAAGCACTCTCAAATAGGGGAGTTCATTTGTCTCCTACATCATTTGAAGTGGGAGACTGGGTGAAATTTAAAAAATCTGTCACAACTCCAACACATGGATGGCAAGGTGCTAGTGCACAAAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAAAGATAATCTCGTTGTTTCATTTTGTTCTGGAGAGGTTCGTCTTCTGGCAAATGAAGTTATAAAAGTCATTCCATTGGACAGGGGACAACATGTACAACTGAAAGAAGATGTAAAAGAGCCTAGATTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGACGAAGATGGAATCCTCCGTGTTGGGTTTCCCGGAGCATCTAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAAGAATTCAAGGTTGGAGACTGGGTTCGCATTCGTCCAACTCTTACATCTGCAAAGCATGGACTAGGAGCTGTGACTCCAGGAAGCATTGGCATCGTATATTGTATACGACCAGACAGCAGTCTGTTAGTAGAACTGAGTTATCTTCCAAATCCATGGCATTGTGAGCCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGGATAGGTGATCGGGTATGCGTGAAACGATCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGCGAGATTGAGAATGATGGTCTCTTAATTATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCTGCGGATATGGAGAAGGTGGAAGATTTCAAGGTTGGAGATTGGGTAAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGAAGATATTACAAGGAACAGCATTGGTGTAATTCATGGCTTGGAGGAGGATGGCGATATGGGTGTTGCTTTTTGCTTCAGAAGTAAGCCTTTTTCTTGCTCAGTCACTGACGTGGAGAAAGTTCCTCCATTTGAGGTGGGACAAGAAATTCATGTGATTGCATCAGTTACTCAGCCTCGTCTTGGGTGGTCAAATGAATCACCAGCTACAGTTGGAAAAGTAGTGAGAATAGACATGGATGGTGCTCTCAATGTGAGGGTCACCGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAGCGGCTTCCAGGATTTGAAGTTGGGGATTGGGTTCGTTCAAAACCAAGCCTGGGAACCAGACCGAGCTATGACTGGAATAGTGTTGGGAGAGAAAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGCAAAGGGAAGTGGATCACTCATTATACGGATGTTGAAAAGGTTCCTAGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGAACTGGTTTGGTTGAACCAAGGTGGGGCTGGAGAGGAGCTCGGCCCGAATCTCAAGGGGTTATAACCAGTATTCATGCTGATGGAGAAGTCAGGATCGCATTTTTTGGTCTTCCAGAGCTGTGGAGAGGGGATCCTTCAGACCTTGAGATTGAACAAATTTTTGAAGTGGGAGAGTGGGTGAGGTTGACAGAAAATGCAAATAATTGGAAATCAATTGGACCAGGTAGTGTTGGTGTTGTTCAAGGAATAGGGTATGAAGGAGATGAACTAGACAGAAGCATTTTTGTGGGATTTTGTGGGGAGCAAGAAAAGTGGGTTGGACCTACTTCACATCTTGAAAGATTTGACAAACTCTTTGTTGGACAGAAGGTTAGAGTGAAACAATATGTGAAGCAACCAAGATTTGGATGGTCAGGGCATAGCCATGCTAGTCTTGGGACCATACAGGCTATTGATGCGGATGGAAAGCTTCGAATATACACTCCAGCAGGATCCAGAACATGGATGTTGGACCCATCAGAAGTGGAGGTGGTAGAAGAGAAGGAGCTGTGTATTGGTGACTGGGTGAGGGTTAAAGCTTCGGTTTCAACCCCAACACACCATTGGGGGGAAGTGAGTCATTCAAGCATTGGAGTTGTGCATCGAATGGAAGATGAAGATCTTTGGGTGGCTTTCTGTTTCATGGAGAGGCTATGGCTTTGTAAGGGTTGGGAAATGGAACGAGTTAGGCCGTTTAAAGTGGGTGACAAGGTAAGGATCAGAGATGGACTGGTGAACCCACGTTGGGGATGGGGAATGGAGACTCATGCGAGCAAGGGAGAAGTTGTAGGGGTAGATGCAAATGGCAAACTAAGAATAAAATTCCGGTGGAGGGAAGGGAGGCCCTGGATAGGAGATCCTGCTGATCTTGCCCTTGACGAAGACTGA 4911 0.4779 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFAPSSDATLACPRCRHVSTVGNSVQALRKNYAVLALLHSATTVANGGVGRGGGGGANFDCDYTDDEEEDGGGEEDEDDEKRRRNSRESQASSSGGCEPVIEVGGGAHQDLKLVRRIGEGRRAGVEMWMAVISGGVEGGRRCRHSVAVKKVTVVEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSVKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDNKGSVSTVMEPSPIPELEVPQENPNHLHRLVSEGDTAGVRDLLAKAVLENGSNYLTSLLEAQNAHGQTALHLACRRGSAELVETILEYREANVDVLDKDGDPPLVFALAAGSLECVRSLVKRNANVQSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAISKKYTDCALVILENGGCKSMSIVNSKNLTPLHLCVATWNVAVVKRWAEVATSDEIAEAIDIPSPIGTALCMAAASKKDHEKEGRELVQILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVQVILAAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGANFNLQDDDGDNAFHIAAETAKMVRENLNWLVIMLMHPDADIEVRNHSGKTLRDILEALPREWLSEDLVEALSNRGVHLSPTSFEVGDWVKFKKSVTTPTHGWQGASAQSVGFVQSVPDKDNLVVSFCSGEVRLLANEVIKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDEDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGAVTPGSIGIVYCIRPDSSLLVELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPADMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHGLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVIASVTQPRLGWSNESPATVGKVVRIDMDGALNVRVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRTGLVEPRWGWRGARPESQGVITSIHADGEVRIAFFGLPELWRGDPSDLEIEQIFEVGEWVRLTENANNWKSIGPGSVGVVQGIGYEGDELDRSIFVGFCGEQEKWVGPTSHLERFDKLFVGQKVRVKQYVKQPRFGWSGHSHASLGTIQAIDADGKLRIYTPAGSRTWMLDPSEVEVVEEKELCIGDWVRVKASVSTPTHHWGEVSHSSIGVVHRMEDEDLWVAFCFMERLWLCKGWEMERVRPFKVGDKVRIRDGLVNPRWGWGMETHASKGEVVGVDANGKLRIKFRWREGRPWIGDPADLALDED 1636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00423 1636 FunFam E3 ubiquitin-protein ligase KEG 737 870 - -
Viun1g00423 1636 FunFam E3 ubiquitin-protein ligase KEG 236 452 - -
Viun1g00423 1636 FunFam E3 ubiquitin-protein ligase KEG 463 693 - -
Viun1g00423 1636 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Viun1g00423 1636 Pfam Ankyrin repeats (many copies) 595 642 IPR002110 GO:0005515
Viun1g00423 1636 SUPERFAMILY RING/U-box 5 61 - -
Viun1g00423 1636 ProSiteProfiles Ankyrin repeat profile. 523 556 IPR002110 GO:0005515
Viun1g00423 1636 SMART ANK_2a 523 553 IPR002110 GO:0005515
Viun1g00423 1636 SMART ANK_2a 804 839 IPR002110 GO:0005515
Viun1g00423 1636 SMART ANK_2a 698 733 IPR002110 GO:0005515
Viun1g00423 1636 SMART ANK_2a 625 656 IPR002110 GO:0005515
Viun1g00423 1636 SMART ANK_2a 738 767 IPR002110 GO:0005515
Viun1g00423 1636 SMART ANK_2a 660 691 IPR002110 GO:0005515
Viun1g00423 1636 SMART ANK_2a 771 800 IPR002110 GO:0005515
Viun1g00423 1636 SMART ANK_2a 557 586 IPR002110 GO:0005515
Viun1g00423 1636 SMART ANK_2a 592 621 IPR002110 GO:0005515
Viun1g00423 1636 ProSiteProfiles Ankyrin repeat profile. 771 803 IPR002110 GO:0005515
Viun1g00423 1636 SUPERFAMILY Protein kinase-like (PK-like) 140 451 IPR011009 -
Viun1g00423 1636 Pfam Ankyrin repeats (3 copies) 717 802 IPR002110 GO:0005515
Viun1g00423 1636 Pfam Ankyrin repeats (3 copies) 502 585 IPR002110 GO:0005515
Viun1g00423 1636 ProSiteProfiles Ankyrin repeat region circular profile. 738 769 - -
Viun1g00423 1636 ProSiteProfiles Ankyrin repeat region circular profile. 771 803 - -
Viun1g00423 1636 ProSiteProfiles Protein kinase domain profile. 147 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00423 1636 PRINTS Ankyrin repeat signature 720 734 IPR002110 GO:0005515
Viun1g00423 1636 PRINTS Ankyrin repeat signature 524 539 IPR002110 GO:0005515
Viun1g00423 1636 Gene3D - 776 855 IPR036770 -
Viun1g00423 1636 SMART ring_2 6 51 IPR001841 -
Viun1g00423 1636 Gene3D - 468 591 IPR036770 -
Viun1g00423 1636 Pfam Ring finger domain 6 52 IPR001841 -
Viun1g00423 1636 Gene3D - 678 775 IPR036770 -
Viun1g00423 1636 Pfam Mind bomb SH3 repeat domain 1255 1376 IPR040847 -
Viun1g00423 1636 Pfam Mind bomb SH3 repeat domain 1059 1123 IPR040847 -
Viun1g00423 1636 Pfam Mind bomb SH3 repeat domain 932 997 IPR040847 -
Viun1g00423 1636 Pfam Mind bomb SH3 repeat domain 879 923 IPR040847 -
Viun1g00423 1636 Pfam Mind bomb SH3 repeat domain 1512 1631 IPR040847 -
Viun1g00423 1636 Pfam Mind bomb SH3 repeat domain 1382 1503 IPR040847 -
Viun1g00423 1636 Pfam Mind bomb SH3 repeat domain 1129 1247 IPR040847 -
Viun1g00423 1636 SUPERFAMILY Ankyrin repeat 519 846 IPR036770 -
Viun1g00423 1636 Gene3D Transferase(Phosphotransferase) domain 1 235 455 - -
Viun1g00423 1636 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Viun1g00423 1636 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Viun1g00423 1636 CDD RING-HC_KEG-like 3 59 - -
Viun1g00423 1636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Viun1g00423 1636 MobiDBLite consensus disorder prediction 96 139 - -
Viun1g00423 1636 ProSiteProfiles Ankyrin repeat region circular profile. 523 545 - -
Viun1g00423 1636 MobiDBLite consensus disorder prediction 97 112 - -
Viun1g00423 1636 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Viun1g00423 1636 Pfam Protein kinase domain 179 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00423 1636 MobiDBLite consensus disorder prediction 447 481 - -
Viun1g00423 1636 Gene3D - 592 677 IPR036770 -
Viun1g00423 1636 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Viun1g00423 1636 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1635 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00423 Viun-Chr1 3201188 3218321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00423 139 471 MAP Kinase Kinase Kinase AT1G53570 24.118 1.83e-18 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Viun1g00423 Pkinase 5.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00423 K16279 - gmx:100777576 3098.53