Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00415 ATGGCATCCATCGATAAGCAAAAGAGAGAAGAAGAAAAGGAACCGTACAGAATGGAAGAAGAAGAAAAAGACGAAGATAGCGAAGAAGAAGAAGAAGCATGGGACGATTGGGAAGGAGAGCGAGAATCGGAATTCACGTGTCTCTTCTGTGACTCCCAGTACAGTTCGTGCAGTTCCTTGTTCGATCATTGCGCCTCCCTTCACCATTTCGATTTCCACGCGATTAGAGCAAGTCTCAACCTGGATTTCTATGCCTCCTTCAAGCTCATCAACTTCGTTCGCTCTCAGGTGGCAGAGAACAAATGTTGGAGTTGTGGATTAACATGTCAAGGCAAGCGTGATTTGCAGAATCATCTGCATGATCTAGTTGACTTTAATGAGATAAAGGCTCTATGGAATGATGATAGATATCTAATACCTTTCATGCAAGATGATTCTCTGCTGTACAGTTTTGGTGAATGTGACGAAGAAGGTGAAGATGAGCAAATTACACCAATTGATGAAGATCTTATAAAGGATTTGATGAACATTGATGAGAGAATCTCTGACGATCATGATGCTTCTGTATCTATTAATCATTTGAATAAGGATAGTTCTTCAAAAAGGGAGATTGTTAATGGTGAAGACTCAATGGGACATGCTTTGTGCAGTGATAAGGATCCAAAAAAGGGACCTTTAATTGCTAATTCTCAAAATCACATTGCAAAGCATATTAAGAAGGTCAATGAAAGTTATTTTGGTTCATACAGTTCATTCGGTATCCATCGAGAGATGTTAAGTGATAAGGTGAGAATGGATGCCTATGGTCAAGCAATTTTGAAGAATCCCTCCCTACTAAAGGGGGCTGTTGTTATGGATGTTGGTTGTGGAACTGGAATCCTCAGCCTATTTTCGGCAAAAGCTGGAGCTTCCAGGGTTATTGCTGTTGAGGCTAGTGCCAAGATGGCAGCAGTGGCATCTCAGGTTGCAAAGGATAACGGTCTTTGGTGGAATAAAAGCCAAAGTGGAATTGATGGTCTCCAAAAGGGAGTCATAGAAGTGGTTCATGGTATGGTTGAAGAGATTGATAAAACAGTTGAACTTCAACCTCATAGTGTTGATGTATTGCTAAGTGAATGGATGGGATATTGCTTGTTGTATGAATCCATGCTCGGTTCAGTGCTTTATGCACGGGACCGGTGGTTGAAGCCTGGTGGTGCCATTCTTCCTGACACAGCAACTATTTTTGTTGCAGGATTTGGAAAAGGAGCCACAAGTCTTCCATTTTGGGATAACGTGTGCGGTTTTGACATGTCTTGCATTGGGAAGGAGCTTGTCGTAGATGCCGCCCAAATTCCTATAGTTGATGTTCTGGACTCACAAGATTTGGTTACCAGTTCTGCGATTCTACAGTCTTTTGACTTGGCAACCATGAAGCCCAATGAAGTGGATTTCACTGCAACTACTACTTTGGAATTGAAACCAAGTGCTTCAGCAACATGGTGCTGGTGCTACGGTGTTGTCCTATGGTTTGAAACCGGTTTTACGAGGAGATTTTGCCGGGAAACACCTTCTGTGTTATCCACATCCCCTTATACCCCAAGAACACATTGGTCGCAAACGATCTTAACCTTTAGAGAACCTATTGCAATGGGGTTTGGAAAAGAAAAGAGGGGTAGACTAGAAGCAATTGGCACTGAGGTGTATCCAGCTTTAAATATCGATTTACGCATTAGCATTGTCCGTTCTACAGAGCATCGCAGCATTGACATTTCCTTAGAAGCTGCTGGTGTTAGTCCTGATGGTCAGAAACGTAGTTGGCCTGCTCAACTTTTCAATCTGCAGTAG 1827 0.4247 MASIDKQKREEEKEPYRMEEEEKDEDSEEEEEAWDDWEGERESEFTCLFCDSQYSSCSSLFDHCASLHHFDFHAIRASLNLDFYASFKLINFVRSQVAENKCWSCGLTCQGKRDLQNHLHDLVDFNEIKALWNDDRYLIPFMQDDSLLYSFGECDEEGEDEQITPIDEDLIKDLMNIDERISDDHDASVSINHLNKDSSSKREIVNGEDSMGHALCSDKDPKKGPLIANSQNHIAKHIKKVNESYFGSYSSFGIHREMLSDKVRMDAYGQAILKNPSLLKGAVVMDVGCGTGILSLFSAKAGASRVIAVEASAKMAAVASQVAKDNGLWWNKSQSGIDGLQKGVIEVVHGMVEEIDKTVELQPHSVDVLLSEWMGYCLLYESMLGSVLYARDRWLKPGGAILPDTATIFVAGFGKGATSLPFWDNVCGFDMSCIGKELVVDAAQIPIVDVLDSQDLVTSSAILQSFDLATMKPNEVDFTATTTLELKPSASATWCWCYGVVLWFETGFTRRFCRETPSVLSTSPYTPRTHWSQTILTFREPIAMGFGKEKRGRLEAIGTEVYPALNIDLRISIVRSTEHRSIDISLEAAGVSPDGQKRSWPAQLFNLQ 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00415 608 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 248 553 IPR029063 -
Viun1g00415 608 SUPERFAMILY beta-beta-alpha zinc fingers 29 164 IPR036236 -
Viun1g00415 608 MobiDBLite consensus disorder prediction 17 38 - -
Viun1g00415 608 FunFam Protein arginine N-methyltransferase 6 238 403 - -
Viun1g00415 608 Pfam Methyltransferase domain 284 399 IPR041698 -
Viun1g00415 608 CDD AdoMet_MTases 284 402 - -
Viun1g00415 608 Gene3D - 405 603 - -
Viun1g00415 608 Gene3D Vaccinia Virus protein VP39 234 403 IPR029063 -
Viun1g00415 608 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 48 590 IPR025799 GO:0016274|GO:0018216
Viun1g00415 608 Pfam C2H2 type zinc-finger (2 copies) 47 121 IPR041661 -
Viun1g00415 608 MobiDBLite consensus disorder prediction 1 38 - -
Viun1g00415 608 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 242 565 IPR025799 GO:0016274|GO:0018216
Viun1g00415 608 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00415 Viun-Chr1 3130890 3135304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00415 22 607 C2H2 Transcription Factor Family AT3G12270 55.502 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00415 K11436 - gmx:100781879 999.579