Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00414 ATGTCACACGACAAGGCTACCAAAAGACTGAGGCGTGGCAGGGAGAAACCAGTGTTAGACAACCATGCGCCTAAGAAACTGAAGTACTGGGTGGAGGAAAAATCCTCAGAGAACAACACTCCTCAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGTTGAAGACATCCGCCACACGCTTCTTAGCCATTTGATTGGTGCTTTTCAAAGAAAGAAAATATGTGCCTTTATAGATGCTGAACTTCAGAGGGGACATGAAATAGGACCATCACTTTTTCAAGCAATTGAACGATCAGACATCCTGTTGATCATATTCTCACCACATTATGCTTCTTCTCATTGGTGCTTAGAGGAACTAGAGAAAATCCTTGAGTGTAGAGACAAGTATGAACGGACTGTGATCCCTGTTTTCTACAATGTGCAACCCACAGATGTACGACATCAATTGCGGACTTATGAAAATGCATTTGTTGAGCATGAACTAAATTATCAGAACAAGGTACAAATCTGGAAAGATGCCTTGAAGCATTCTGCTGATTTATCTGGAATTGATTCGTCAAAATTTCCATGTGATTTTGAACTGGTTGAAGAAATTGCCACTGTTGTGCTGAAGGGGTTGGCTAAACCCCTGGTTGTTGCAAAAGAACTTGTTGGAATTGATGAAAAAATTGCAACAATAGAATCATGGATAAAAAAGGATTCAAAAGGCACTTGTCTGATTGGAATTTGGGGTATGGGCGGTATAGGCAAAACAACCCTTGCAGAAGAGGTCTTCAACAAACTACATTCTGAATATGAAGCTTGTTATTTTTTGGCTCATGAAAGGGAAGAATCAAACAAACATGGAATAATTTCTTTGAAGGAAAAAATATTCTCCGAACTATTAGGATGTGAAGTGAAAATTTATACACAAAATTCATTGCCAGGACATATTGCTAGGAGAATCAGTCGAATGAAGGTTCTCATTGTTCTTGATGATGTTAATAATTCTGATCACATAAAAAATCTATTGGGAGATTTTGGAAATTTTGGATCGGGCAGTACAATAATTGTAACAACTAGAAATGAGCAAGTGCTCAAGACAAACAAGGTTGATGAGACATACCAGCTTACGAAACTCAGTTTCAACGAAGCTCTTGAACTTTTTCATTTACTTGTCGGAAAACAAAACGATAATCAAAGGGAGTACAATGAGCTATGTGAAAGGGTGGTCCATTATGCCCAAGGTATTCCATTAGTTCTTAAAGTTTTGGCTGGTCATCTTCGTGGAAACAAAAAGGAAGTGTGGGAAAGTGAGCTAGACAAGCTTAAAGGGATGCCTCACAAAGAAGTTTATGATGTAATGACATGGAGTTTCTATGATCTAGATCGTAAACAACAGCAGATTTTTCTTACAGAGTGGATAAATGTGGGTGAGCTAAAGTTTTTATTGAAAGATAGCGAAAGGGATAATTCTGTTGTGGCTGATTTACAAAGGTTGAAAGAGAAATCTCTTATAACCGTGTCCAAGGATAATTTTGTATCCATGCATGATAATTTACAAGACATGGCTTGGGAGATTGTACGTCAAGAGTCTATTGAAGACCCTGGAAGACGAAGTCGGTTGTGGGATCCTGATGACATTTATGAAGCATTGAAAAGTGATAAGGTTAGCCTAAATGAATATATATCTTTTCTTTTGACTAACTTTTGGTTTACTCACACTTGGATTCTTAACAATTATGAATTTGATTGCTTAAATCAGCTTCACATTCTTGCTGAGGGACTTCAATTTTTGGCAACTGAACTAAGATTTATTGCCTGGCTCGGGTGCCCTCTTAAATCCTTACCAGAAAATTTTTCTGCTGAAAAACTTGTTATATTGAAGTTGCCAGATAGCAACATGGAAAAACTTTGGGATGGAGTAAAGAATCTAGTAAATTTAATAGAAGTTGACCTCAGTGGCTCTGAGAAGTTAAAGGAGCTGCCAGATTTATCAAAAGCCACAAATCTTGAAGTACTATATCTTGGGGGTTGTTCTGCATTGATTTGTGTGCATCCATCTATTTTTTCTCTGGCCAAACTTAAGAAATTGGAGCTTTGGGGTTGCGTGTCTCTTACCACACTCACAAGCAATTGTCACCTAGGCAGCCTCAGTTTTCTCGATCTTGATTATTGCAAGAATCTCACGGAATTCTCAGTGATTTCAGAGAATATGGAAGAACTGAGATTAGAACGTACAAAGGTCAAAGCACTTCCCTCATCATTTGAATTTCAAAGCAAGCTTAGATTTCTAGATCTAGCAGGTAGTGACATTGAGAGTTTACCTTCATCCTTAACAAATCTTAATCAACTGCTATATCTAGAGGTAAGTAATACTTCACTTCAAGTCATAACATATAACTCTAAAAGCAAGTTTCTGTACTCCACTTCAAATTCTACCAAATCTTCCACTCTACCCCCATCCCTTAAAACTCTAAGTGCTCAATACTGCAACTCACTTCAAATTCTACCTGAGCTTCCACTGTCCCTTGAAACTCTAAATGCAAAATTCTGCCCTTCACTTCAGACTCTATCAAAGCTTCATCAGTCCCTTACAACTCTAGATGTTGCAGGTTGTGAATCCCTTCAAATTCTACCAAACATTCCCCAGTCCCTTGAAACTTTAGATGTCAGTTTCTGCAAATCACTTCAAACTATACCAAAGCTTCCTTTGTCCCTGAAAAATCTAGCTATTAGACACTTGAGTTTAGTTAAAACTCTACCAAACCTTCCCCAGTCCCTTCAAACTCTACATACTGAATTTTTCCTTTTACTTCGGACTCTACCAGAGATTCCCCACTCCCTTAGAACTCTGAATGTTGTATTTTGGACTTCACTTCAGACTCTACCAGAGCTTCCTCCATCCCTTGAAACTCTAAGTGCCCAACACTGTTATTCACTTCAAATTCTACCAAAGCTTCCTCCGTCCTTGAAAACTCTAGATGTTACACACAATGTTTCACTTCAAACTCTACCCCAGCTTCCTCAATCCCTTCAAACTCTAACTGCTAAATCTTGCACTTTACTTCAAATTCTACCAAAGCTTCCATTGTCCCTTGAAACATTAAAGGTGGAATATTGCTCTTCACTTCGGACTCTGCCAAATCTTCCCCAGTCTCTTACAACTCTAGATATCACATATTGTAAATCCCTTCAAACTCTACCAGACATTCCCCAATTCCTTGAAACTTTAGATTTCAGCTTCTGCAAATCACTTCAAATTCTACCAAAGCTTCCTTTGTCCTTGAAAACTCTAGTTGTTGGACACTTGAGTTCACTTCAAACTCTACCAGACCTTCCACAGTCCCTTCAAACTCTGAATACAAAATTTTGCTCTTCACTTCTGACTCTACCAAACCTTCCTCATTCCCTTAAAACTCTTGAAGTCCCAGGCTGCAAATCACTTCAAACTCTACCAGATCTTCCTTAG 3450 0.3838 MSHDKATKRLRRGREKPVLDNHAPKKLKYWVEEKSSENNTPQIKYDVFVSFRVEDIRHTLLSHLIGAFQRKKICAFIDAELQRGHEIGPSLFQAIERSDILLIIFSPHYASSHWCLEELEKILECRDKYERTVIPVFYNVQPTDVRHQLRTYENAFVEHELNYQNKVQIWKDALKHSADLSGIDSSKFPCDFELVEEIATVVLKGLAKPLVVAKELVGIDEKIATIESWIKKDSKGTCLIGIWGMGGIGKTTLAEEVFNKLHSEYEACYFLAHEREESNKHGIISLKEKIFSELLGCEVKIYTQNSLPGHIARRISRMKVLIVLDDVNNSDHIKNLLGDFGNFGSGSTIIVTTRNEQVLKTNKVDETYQLTKLSFNEALELFHLLVGKQNDNQREYNELCERVVHYAQGIPLVLKVLAGHLRGNKKEVWESELDKLKGMPHKEVYDVMTWSFYDLDRKQQQIFLTEWINVGELKFLLKDSERDNSVVADLQRLKEKSLITVSKDNFVSMHDNLQDMAWEIVRQESIEDPGRRSRLWDPDDIYEALKSDKVSLNEYISFLLTNFWFTHTWILNNYEFDCLNQLHILAEGLQFLATELRFIAWLGCPLKSLPENFSAEKLVILKLPDSNMEKLWDGVKNLVNLIEVDLSGSEKLKELPDLSKATNLEVLYLGGCSALICVHPSIFSLAKLKKLELWGCVSLTTLTSNCHLGSLSFLDLDYCKNLTEFSVISENMEELRLERTKVKALPSSFEFQSKLRFLDLAGSDIESLPSSLTNLNQLLYLEVSNTSLQVITYNSKSKFLYSTSNSTKSSTLPPSLKTLSAQYCNSLQILPELPLSLETLNAKFCPSLQTLSKLHQSLTTLDVAGCESLQILPNIPQSLETLDVSFCKSLQTIPKLPLSLKNLAIRHLSLVKTLPNLPQSLQTLHTEFFLLLRTLPEIPHSLRTLNVVFWTSLQTLPELPPSLETLSAQHCYSLQILPKLPPSLKTLDVTHNVSLQTLPQLPQSLQTLTAKSCTLLQILPKLPLSLETLKVEYCSSLRTLPNLPQSLTTLDITYCKSLQTLPDIPQFLETLDFSFCKSLQILPKLPLSLKTLVVGHLSSLQTLPDLPQSLQTLNTKFCSSLLTLPNLPHSLKTLEVPGCKSLQTLPDLP 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00414 1149 Gene3D - 372 456 IPR042197 -
Viun1g00414 1149 SUPERFAMILY L domain-like 525 917 - -
Viun1g00414 1149 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 45 725 IPR044974 GO:0006952
Viun1g00414 1149 PRINTS Disease resistance protein signature 314 328 - -
Viun1g00414 1149 PRINTS Disease resistance protein signature 239 254 - -
Viun1g00414 1149 PRINTS Disease resistance protein signature 407 421 - -
Viun1g00414 1149 PRINTS Disease resistance protein signature 706 722 - -
Viun1g00414 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 464 IPR027417 -
Viun1g00414 1149 ProSiteProfiles TIR domain profile. 43 206 IPR000157 GO:0007165
Viun1g00414 1149 Pfam NB-ARC domain 226 437 IPR002182 GO:0043531
Viun1g00414 1149 FunFam Disease resistance protein (TIR-NBS-LRR class) 41 208 - -
Viun1g00414 1149 Gene3D Ribonuclease Inhibitor 564 730 IPR032675 -
Viun1g00414 1149 Gene3D Ribonuclease Inhibitor 1066 1149 IPR032675 -
Viun1g00414 1149 SUPERFAMILY L domain-like 869 1146 - -
Viun1g00414 1149 Gene3D Ribonuclease Inhibitor 804 934 IPR032675 -
Viun1g00414 1149 Gene3D Ribonuclease Inhibitor 935 1065 IPR032675 -
Viun1g00414 1149 Pfam TIR domain 44 202 IPR000157 GO:0007165
Viun1g00414 1149 SUPERFAMILY Toll/Interleukin receptor TIR domain 36 182 IPR035897 -
Viun1g00414 1149 SMART LRR_bac_2 918 938 - -
Viun1g00414 1149 SMART LRR_bac_2 1086 1106 - -
Viun1g00414 1149 SMART LRR_bac_2 1065 1085 - -
Viun1g00414 1149 SMART LRR_bac_2 960 980 - -
Viun1g00414 1149 SMART LRR_bac_2 939 959 - -
Viun1g00414 1149 SMART LRR_bac_2 1128 1148 - -
Viun1g00414 1149 SMART LRR_bac_2 1002 1022 - -
Viun1g00414 1149 SMART LRR_bac_2 876 896 - -
Viun1g00414 1149 SMART LRR_bac_2 1044 1064 - -
Viun1g00414 1149 SMART LRR_bac_2 834 854 - -
Viun1g00414 1149 SMART LRR_bac_2 1023 1043 - -
Viun1g00414 1149 SMART LRR_bac_2 897 917 - -
Viun1g00414 1149 SMART LRR_bac_2 981 1001 - -
Viun1g00414 1149 SMART LRR_bac_2 813 833 - -
Viun1g00414 1149 SMART till_3 44 180 IPR000157 GO:0007165
Viun1g00414 1149 Gene3D - 39 210 IPR035897 -
Viun1g00414 1149 Pfam Leucine Rich Repeat 617 636 IPR011713 -
Viun1g00414 1149 Gene3D - 211 368 IPR027417 -
Viun1g00414 1149 Gene3D Ribonuclease Inhibitor 731 803 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00414 Viun-Chr1 3116000 3121151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00414 45 821 WRKY Transcription Factor Family AT4G12020 30.779 1.25e-76 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00414 - - vun:114182250 2248.78