Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00411 ATGGATGAATGCCACTGTCGTGCATACCCACAAGTTTCTGCCTCCGATCGTGTGTCAGAATCTCCATTTTTTCACAGTGATCAACAACACTTCAACGTACAATTTGAGTACTCAGAAATGTACGTTTTCAGTGCAAGGAAATTCGACGCCTTTTGCAAAGTTTCACTCCACAACTTTCCAAACATTCCGAAGAATCAAATAATGCAAGAAACAACCATCGTGTCATGGCTTTCCCACATGGGTGTGCCTCGGAATTCTCACAGTGTCGTGGTCGCAGAAGTGTTACGATGTGTACGTGACATGGTTCGTGACACAGATACGCATGTTCTTGGTATGCATGTGGAAATGAACATTACTCGTGCAACAGAAGATGAAATAAGCGACAGTGATAGCGACAATGATGATAGTTTTGAAGAAGTTGACGACGATGGTTTCGAAGAAGACGATGATGAAGACGATTATGGATTAGTGGCTGCAGACAAGGCAATTGTTGAAGGTTTGGAGATGGTTGAAGAGAAGGGTTCGGAAAGGTGTTCCATTTGTTTCGAGGATTTTGATGTTGGTGTTCGTATGCCTTGCTTGCACATGTTTCACAAAAACTGCATCAGTGAGTGGTTGCAAAGAGGCAATTCTTGTCCTTTGTGTCGCTTTCAGTTGCCTACTCAAAGGGATTGA 675 0.4311 MDECHCRAYPQVSASDRVSESPFFHSDQQHFNVQFEYSEMYVFSARKFDAFCKVSLHNFPNIPKNQIMQETTIVSWLSHMGVPRNSHSVVVAEVLRCVRDMVRDTDTHVLGMHVEMNITRATEDEISDSDSDNDDSFEEVDDDGFEEDDDEDDYGLVAADKAIVEGLEMVEEKGSERCSICFEDFDVGVRMPCLHMFHKNCISEWLQRGNSCPLCRFQLPTQRD 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00411 224 SMART ringv_2 177 216 IPR011016 GO:0008270
Viun1g00411 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 127 220 - -
Viun1g00411 224 SUPERFAMILY RING/U-box 177 222 - -
Viun1g00411 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 224 IPR013083 -
Viun1g00411 224 MobiDBLite consensus disorder prediction 127 151 - -
Viun1g00411 224 MobiDBLite consensus disorder prediction 121 151 - -
Viun1g00411 224 SMART ring_2 178 215 IPR001841 -
Viun1g00411 224 Pfam Ring finger domain 177 216 IPR001841 -
Viun1g00411 224 ProSiteProfiles Zinc finger RING-type profile. 178 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00411 Viun-Chr1 3026510 3027184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00411 178 221 C3H Transcription Factor Family AT3G60080 55.319 1.69e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00411 - - pvu:PHAVU_005G024400g 241.891