Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00356 ATGAAAGACCTAACTGTTTGTGCAGAAGATTCTTTTTCCTGCCTACTCGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGTTAGCTTTAGATAGCGATATTTCTCTAATAAACAAAGTTGGGCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCAGGAGCACCGAACTCCTTTAATGGTTGCTTCAATGTATGGGAGTGTGGATGTTCTAAAACTTATACTGTCGTGTCCCGAGGTTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTTCATTGTGCTGCATCAAGTGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTGTCATCTGGTGCTGACATCAGATGCGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCGAAGGTTTTAAAGCAACTCTTGAAGATCTACTTTCAGATAGTGGTTGTGATGGGTCTGTTGGTGACTGTTTTATTCCAGTAGCAGTTAATTCATCATGTGCGGATTCAGCGACTCATTTTTTATCACCTGAAAATGGGTTGCCATCCTCTCCTATGGCGTCCAAGTTTACTGATGCAACTGTTAATTCTGCCTCCGAGAAGAAAGAATATCCAATTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTTCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGTGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTACAGTTGTGTGCCATGCCCTGAATTTAGAAAGGGGGCTTGTAGACGCGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTACACCCTGCCCAATATCGAACAAGGCTGTGCAAAGACGGTGTTAGCTGTAATAGAAGGGTTTGTTTTTTTGCCCACACCGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCCGCGGTTCCTTCACCCCGTTCGTCTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCCGGTTCACCTTCGTCACTTTCTGCCATGTCTCCATCTCCCTTCGCTCAGCAAATGTCTCCATCTACAGGTGGCATTTCTCACTCATCTTCTGCTTGGCCGCAGCCGAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCGCCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACACCTTTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCTGGTGCCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAGTGTCTCATCTCCTAGGAATGTTGAGCATACTCTTTTACAGGCTTCATTTGGTGTCTCTTCCCCGGGAAGGATGTCACCGAGAAGTTTGGAACCAATCTCTCCAATGAGCGCCCGATTATCTGCATTTGCACAGCGTGACAAGCAGCAGCAGCAGCAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTTGGGTCCCCAGGTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAGGTAGATTGGTCGGTGAATGGAAATGAGTTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAAACAACGGGGAGGAGCCTGATCTGTCCTGGGTTCAATCCCTCGTGAAAGAATCTCCATCCGAGATTAAAGAGAAGTTGGCAGGTTCTGGTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2103 0.4532 MKDLTVCAEDSFSCLLELASNNDFEDFKLALDSDISLINKVGLWYVRQIGSKQIVQEHRTPLMVASMYGSVDVLKLILSCPEVDVNFSCGTDRSTALHCAASSGSVNAVDVVKLLLSSGADIRCVDANGNRPVDVIVVPPKLEGFKATLEDLLSDSGCDGSVGDCFIPVAVNSSCADSATHFLSPENGLPSSPMASKFTDATVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSLSAMSPSPFAQQMSPSTGGISHSSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPEDLDVLQDFDGQQHLLNDLSCFSQPRPGAISVSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNVEHTLLQASFGVSSPGRMSPRSLEPISPMSARLSAFAQRDKQQQQQQLRSLSSRDLGAHNPVSIVGSPGNSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLAGSGGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLVV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00356 700 Pfam CCCH-type zinc finger 275 295 IPR041367 -
Viun1g00356 700 MobiDBLite consensus disorder prediction 563 606 - -
Viun1g00356 700 MobiDBLite consensus disorder prediction 564 585 - -
Viun1g00356 700 MobiDBLite consensus disorder prediction 592 606 - -
Viun1g00356 700 SMART ANK_2a 57 87 IPR002110 GO:0005515
Viun1g00356 700 SMART ANK_2a 92 124 IPR002110 GO:0005515
Viun1g00356 700 MobiDBLite consensus disorder prediction 374 397 - -
Viun1g00356 700 Gene3D - 2 147 IPR036770 -
Viun1g00356 700 SUPERFAMILY Ankyrin repeat 9 137 IPR036770 -
Viun1g00356 700 PANTHER UNKEMPT FAMILY MEMBER 17 651 IPR045234 -
Viun1g00356 700 Coils Coil 562 582 - -
Viun1g00356 700 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Viun1g00356 700 Pfam Ankyrin repeats (3 copies) 42 124 IPR002110 GO:0005515
Viun1g00356 700 MobiDBLite consensus disorder prediction 657 678 - -
Viun1g00356 700 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Viun1g00356 700 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Viun1g00356 700 Gene3D - 271 333 - -
Viun1g00356 700 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Viun1g00356 700 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Viun1g00356 700 SMART c3hfinal6 270 296 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00356 Viun-Chr1 2494088 2498399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00356 9 697 C2H2 Transcription Factor Family AT5G12850 54.930 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun1g00356 Ank_2 5.2e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00356 - - gmx:100813725 1231.08