Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun1g00336 | ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCGCTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCCTATCCTCCTCTTTCATACTCAAACATAACTAACAACTTCTCCAATATTCTTCAATCAGAAACCTCTTCCTCATCTTGTGCAGCTCCTCCTTCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAGTCTCATAAAGCAGAAGGAGAATGAACCCTCCAACGCTGCTGGAAACGAATTAGCTGAAGAGGAAGGGCACAAGAAAAGAGACATCGATGAGACCCTTTTGACTGAAGATGGTGATGATGAAACTGTGGAAGTAGCACTGCACATAGGGCTTCCTAGCGTGGATTCTTCTGATCTTCTGGGATCGGAGAAGATCTCTTCAGCCTGTGCACAAATGGGTGGGAAAAGGGAAGTGAGTGTGGTTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATAGGTCCTACTCAGTTCTTATGTTCTGTGTGCTCCAAGAGTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAACCATCAGCAATGCTAAGGCTGCCATGTTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGAGCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGTATCAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAGGGTGATTGGCGGACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGCTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCTATGGCCATGGAGCTGTTGACATTGATTGCATGCAGGAAGATGAAGCTGCCTCCGAAATTGAACATGATGGAGATAGCTCAATGTGA | 1035 | 0.4386 | MTDPHSNLYAGTFNFMPLYSHRSSFTSQPNHFSSYPPLSYSNITNNFSNILQSETSSSSCAAPPSPPLREALPLISLIKQKENEPSNAAGNELAEEEGHKKRDIDETLLTEDGDDETVEVALHIGLPSVDSSDLLGSEKISSACAQMGGKREVSVVSGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAVDIDCMQEDEAASEIEHDGDSSM | 344 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun1g00336 | 344 | Gene3D | Classic Zinc Finger | 247 | 321 | - | - | |
Viun1g00336 | 344 | PANTHER | ZINC FINGER PROTEIN WIP2 | 33 | 337 | IPR043584 | GO:0003700|GO:0010468 | |
Viun1g00336 | 344 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 186 | 206 | IPR013087 | - | |
Viun1g00336 | 344 | SMART | c2h2final6 | 184 | 206 | IPR013087 | - | |
Viun1g00336 | 344 | SMART | c2h2final6 | 268 | 288 | IPR013087 | - | |
Viun1g00336 | 344 | MobiDBLite | consensus disorder prediction | 82 | 104 | - | - | |
Viun1g00336 | 344 | FunFam | Zinc finger protein WIP2 | 237 | 319 | - | - | |
Viun1g00336 | 344 | Gene3D | Classic Zinc Finger | 183 | 206 | - | - | |
Viun1g00336 | 344 | SUPERFAMILY | beta-beta-alpha zinc fingers | 177 | 206 | IPR036236 | - | |
Viun1g00336 | 344 | SUPERFAMILY | beta-beta-alpha zinc fingers | 252 | 288 | IPR036236 | - | |
Viun1g00336 | 344 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 184 | 211 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun1g00336 | Viun-Chr1 | 2272109 | 2274376 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun1g00336 | 1 | 337 | C2H2 Transcription Factor Family | AT3G57670 | 51.475 | 9.42e-116 | 338 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Viun1g00336 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun1g00336 | - | - | vra:106761045 | 640.188 |