Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00336 ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCGCTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCCTATCCTCCTCTTTCATACTCAAACATAACTAACAACTTCTCCAATATTCTTCAATCAGAAACCTCTTCCTCATCTTGTGCAGCTCCTCCTTCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAGTCTCATAAAGCAGAAGGAGAATGAACCCTCCAACGCTGCTGGAAACGAATTAGCTGAAGAGGAAGGGCACAAGAAAAGAGACATCGATGAGACCCTTTTGACTGAAGATGGTGATGATGAAACTGTGGAAGTAGCACTGCACATAGGGCTTCCTAGCGTGGATTCTTCTGATCTTCTGGGATCGGAGAAGATCTCTTCAGCCTGTGCACAAATGGGTGGGAAAAGGGAAGTGAGTGTGGTTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATAGGTCCTACTCAGTTCTTATGTTCTGTGTGCTCCAAGAGTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAACCATCAGCAATGCTAAGGCTGCCATGTTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGAGCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGTATCAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAGGGTGATTGGCGGACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGCTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCTATGGCCATGGAGCTGTTGACATTGATTGCATGCAGGAAGATGAAGCTGCCTCCGAAATTGAACATGATGGAGATAGCTCAATGTGA 1035 0.4386 MTDPHSNLYAGTFNFMPLYSHRSSFTSQPNHFSSYPPLSYSNITNNFSNILQSETSSSSCAAPPSPPLREALPLISLIKQKENEPSNAAGNELAEEEGHKKRDIDETLLTEDGDDETVEVALHIGLPSVDSSDLLGSEKISSACAQMGGKREVSVVSGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAVDIDCMQEDEAASEIEHDGDSSM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00336 344 Gene3D Classic Zinc Finger 247 321 - -
Viun1g00336 344 PANTHER ZINC FINGER PROTEIN WIP2 33 337 IPR043584 GO:0003700|GO:0010468
Viun1g00336 344 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Viun1g00336 344 SMART c2h2final6 184 206 IPR013087 -
Viun1g00336 344 SMART c2h2final6 268 288 IPR013087 -
Viun1g00336 344 MobiDBLite consensus disorder prediction 82 104 - -
Viun1g00336 344 FunFam Zinc finger protein WIP2 237 319 - -
Viun1g00336 344 Gene3D Classic Zinc Finger 183 206 - -
Viun1g00336 344 SUPERFAMILY beta-beta-alpha zinc fingers 177 206 IPR036236 -
Viun1g00336 344 SUPERFAMILY beta-beta-alpha zinc fingers 252 288 IPR036236 -
Viun1g00336 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00336 Viun-Chr1 2272109 2274376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00336 1 337 C2H2 Transcription Factor Family AT3G57670 51.475 9.42e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g00336 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00336 - - vra:106761045 640.188