Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00329 ATGATCTTTTCTAAAATAATTAAACGAAATTTAACGGACCCCGACACAGCGCCAAAAAACCCTCATACCCGGTTCAAATGGATCGCACTTAGGTTTTCACCGTCACATTTTGTCCTTTATTCCCCTTTTCTTCCGTTCCATTTCCTCAATTCCCACTCCATCGTCATGTCCTACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGTGATCAATGTGATTTTGTTCATGAGAGAAGGGATGGTGTAAATTATAATATTTGTACCTATTATCAAAAAGGAGTATGTGCTTATGGCAGTAGATGCAGATATAAACATGTCAAAGCTTATGAAGCGTCATCTTCGTCTTCATCAAACGGACGTCATCCTCCTGTCTCAGATTCTGTGGTGAATCATACCACCAAAGGGGCATCGAGCTGGGTTCCAAAGGCTTCAAAGTCATCTTCATTAGACAAGTGTGCAAGGAGTTCACAACATAAGATTGTGGTCTGTTCTGGAAATGATGTTGGTGAATCCAGTTCTAGTGGTACTACACCATCTGGACTTTTGTTTTGTTCATTTGCTGCTGCCAACTGCCCCCGTGGAAATAAATGTTCTCGTGTTCATGGAAATCGATGTTTATACTGTAGAAAATTTTGCTTACATCCTACTGACAGAGAGGAAAGAGAAAATCATCTGGCAACTTGTGAGAAAAAGGAAAAATATTTTCAGGCTTTGAATGATAGCCAAGAAGTAGAATGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAGCCTAGACCATCTGATTGTAAGTTTGGTCTGCTTCCTGAATGTGACCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACATGAGTAATAATGGAACTGCTAATACAGTGAGAACATGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAACTGCAAGCAAATTGATTGCAAGCATTTTAACTTCGGAAACGGGAATTGTCCATTTGGGGCTAGCTGCTTCTACAAGCACACTGTGAAGCCCGGCTCATACACATGGATACATCGCAGGCCACCACCACCACAGCGGAGACAAAACAATCTTAACATGAATGAGATGTTGGACATGCTCAGCGATGTTGATTTAACTAGTGCTGAATATCTTTCTATCATGAGGGACTCGGATCTTTTTGATGATATGGATCCATTTGGGATGATAGATATATCTGATAGGCTTGCTGGTGAATCAGGTCTTTGTTTTGGCCCTTTTGATTCTGATGAAGAAGGGGTAGATTTTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGATGATTTTGGTCTTGAAGATTTTGATGATGAAGAGTTCAACCCTATGGAGGCTGCCTTGTTATCCATGATGATGCATTCTAACATAGATGAAGATGAAGAGGAAGAATACAGTGATGAGTACTACTAG 1536 0.4062 MIFSKIIKRNLTDPDTAPKNPHTRFKWIALRFSPSHFVLYSPFLPFHFLNSHSIVMSYRVCKFYARGACLKGDQCDFVHERRDGVNYNICTYYQKGVCAYGSRCRYKHVKAYEASSSSSSNGRHPPVSDSVVNHTTKGASSWVPKASKSSSLDKCARSSQHKIVVCSGNDVGESSSSGTTPSGLLFCSFAAANCPRGNKCSRVHGNRCLYCRKFCLHPTDREERENHLATCEKKEKYFQALNDSQEVECNVCLERVLSKPRPSDCKFGLLPECDHAFCLSCIRNWRNSAPTSGMDMSNNGTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKQIDCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHRRPPPPQRRQNNLNMNEMLDMLSDVDLTSAEYLSIMRDSDLFDDMDPFGMIDISDRLAGESGLCFGPFDSDEEGVDFFQMAALSEALVSGVDDFGLEDFDDEEFNPMEAALLSMMMHSNIDEDEEEEYSDEYY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00329 511 CDD RING-HC_MKRN 247 312 - -
Viun1g00329 511 PANTHER MAKORIN-RELATED 59 396 IPR045072 GO:0000209|GO:0061630
Viun1g00329 511 Pfam RNA-binding, Nab2-type zinc finger 346 367 - -
Viun1g00329 511 Pfam RNA-binding, Nab2-type zinc finger 61 79 - -
Viun1g00329 511 ProSiteProfiles Zinc finger C3H1-type profile. 56 82 IPR000571 GO:0046872
Viun1g00329 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 348 IPR013083 -
Viun1g00329 511 ProSiteProfiles Zinc finger C3H1-type profile. 341 370 IPR000571 GO:0046872
Viun1g00329 511 ProSiteProfiles Zinc finger C3H1-type profile. 89 111 IPR000571 GO:0046872
Viun1g00329 511 SMART c3hfinal6 57 81 IPR000571 GO:0046872
Viun1g00329 511 SMART c3hfinal6 181 206 IPR000571 GO:0046872
Viun1g00329 511 SMART c3hfinal6 341 369 IPR000571 GO:0046872
Viun1g00329 511 SMART c3hfinal6 86 110 IPR000571 GO:0046872
Viun1g00329 511 SUPERFAMILY CCCH zinc finger 57 80 IPR036855 GO:0046872
Viun1g00329 511 SUPERFAMILY CCCH zinc finger 86 108 IPR036855 GO:0046872
Viun1g00329 511 Gene3D - 55 122 - -
Viun1g00329 511 Pfam Zinc finger, C3HC4 type (RING finger) 249 311 IPR018957 GO:0046872
Viun1g00329 511 ProSiteProfiles Zinc finger RING-type profile. 249 312 IPR001841 -
Viun1g00329 511 Coils Coil 328 348 - -
Viun1g00329 511 Pfam CCCH-type zinc finger 89 108 IPR041367 -
Viun1g00329 511 SUPERFAMILY RING/U-box 239 318 - -
Viun1g00329 511 SMART ring_2 249 311 IPR001841 -
Viun1g00329 511 ProSitePatterns Zinc finger RING-type signature. 273 282 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00329 Viun-Chr1 2229466 2235904 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun1g00329 zf-C3HC4 6.7e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00329 K15687 - gmx:100788886 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00329 1 2229466 2235904 Viun1g00329 1 2229466 2235904 ECH