Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00298 ATGTTCGCGGCGTCTCCGCCACCCTCCGCCGCCGTTACCACCGCCGGCGTTGGTCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCCTCATCTCCTCCATCATGCTCGCCTCCTACGCCTGCGTCCGCTTCAAATCTAACTCTCCTCGCACTCGTAACAACACTCATTACGACCAAACGGAACAGAATCACAACATTCACGACTCCGGTGGGCCCGAGCCCGTCGTCCTGGGCCTGGAAAAGCCCGCCATCGAGGCCTACCCGAAGATCGTCGTCGGAGAGAGCGGCCGCCTCCCCAGGCCCAACGACAGTGGCTCCTGCGCCATCTGCCTCTGCGATTACCTTCCTAAGGACACCGTGCGCTGCGTTCCGAGCTGCCACCACTGCTTTCACGCGGACTGCGTTGACGCGTGGCTGAAGATGAGTGCCACGTGTCCGCTCTGCCGGAACTCCCCGGTGCCGTCTCCGTCGCCGTCGCCGTCACCGACGCCGATGTTGGAGCTCGTTCCGCTGGCTTTCCACGCCAGGTGA 537 0.6369 MFAASPPPSAAVTTAGVGLGYGIAIAVSILVLISSIMLASYACVRFKSNSPRTRNNTHYDQTEQNHNIHDSGGPEPVVLGLEKPAIEAYPKIVVGESGRLPRPNDSGSCAICLCDYLPKDTVRCVPSCHHCFHADCVDAWLKMSATCPLCRNSPVPSPSPSPSPTPMLELVPLAFHAR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00298 178 CDD RING-H2_EL5-like 108 151 - -
Viun1g00298 178 PANTHER RING-H2 FINGER PROTEIN ATL67 9 176 IPR044289 GO:0016567|GO:0016740
Viun1g00298 178 MobiDBLite consensus disorder prediction 52 74 - -
Viun1g00298 178 MobiDBLite consensus disorder prediction 52 69 - -
Viun1g00298 178 SMART ring_2 109 150 IPR001841 -
Viun1g00298 178 SUPERFAMILY RING/U-box 108 159 - -
Viun1g00298 178 Pfam Ring finger domain 108 151 IPR001841 -
Viun1g00298 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 155 IPR013083 -
Viun1g00298 178 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00298 Viun-Chr1 1845364 1846148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00298 15 178 C3H Transcription Factor Family AT5G07040 57.927 1.40e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00298 - - vra:106761828 325.094