Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00279 ATGCCTCCCAAGAAGAAGAAACTCAATCCTCAGCAACCTTCCAAGTTCGGCATCCAGCACTTCTTCGATCGCGCCTCTCAGAAACAACCCCACCTTCAACCCCACACCACCACCACCACCACCGCCACCGCCGCCTCCGCCAGCACTACCGCTACCGCCACCTCTACCAGCACCGCCGCCGACACCACCTTCACCTCCACTAGCACCGCCGCCGCCACCTCCACCAGCACCGCCGCTGCCACCTCCACCTCCACCAGCACCGCCGCTGCCGTGACCTCCACCATCAATTCGCCACAACAACCCGACGAAGGGTCTCCGCAAACGCGTTTCAACTTCTCCCCGGGAATGTTAGTGAAGCAGAGCCAGGATGACGGCGTCAACGAGGTCACCTGGAAAATATCTCCCGTGAATGAGAGGCTTCTGGCTGTTTCCAAACACACTCCTGAAGTGATCAAAGCGTTGGCCGCCTCTTCCAAAATGAACTTGTCGCCAATTCGCAATGACAGCGGCAAGGAGACTTGTCTGGATAAGGTTGCTTCGCCAACTCCCAAGGTGCCCTTGAGCTTCAAAAGGATAAACTCGGCCCTTGATGTGATCGGACAGAGTCCCTTCAGAACTCCACCGTCTCTGTCTTATCGGCCTGACAAGGTGCAGCGGAGCAAGGATATTGAACACAAGAGACCGTGTGACCAGCTTTTGTTAAGACAGAACAAAAAGGCACTGCTTGAACTCCTAGATCAAGTTGAAGATGCCATTGCCATTGACGATGCTCCAGTTTGCAATAGCAACACTTATTCCTTTAAAATACCTCAAAATCAAGCTTACGAGCTCCCTGTCAAAGTCAGACCTGCAGTAGAAAGGACCAAATCACATTTACCTGAAGAGGTTGTTGATGTCTTCTCCAATTCTAATTATTTGGTTTTGGAGGTATCTGAACTTAGGTCTGCTGATTCATCTGCTGCTCAATGCTCATCATACAAGGTGCTACGCTTGCTAAATGAACAAACTGGGGAAGAGCGGGCTGTAAACCTATGGAATGAGTGGTCTTGTTGTGTAATTGCACCTGGAGATACTGTGCATGTAATCGGACAATTTGATGAAGGGGGGAATTGTGATATTGATCGTGATAAAAACTTTTTGATTGTACACCCAGATATTCTAATGTCTGGAACGCGGGTTGCTTCCAGTTTTAGCTGCCCAAGGAGAACTGTCTTAGACGAGAGGCTGAAAAACAATGATTACTCAACTGCAGCATTAGCTGGAACAATGCTGCACCAAATTTTCCAGGCTGGGCTAACAAATGACCATCCTACAGTAAGTTTCATGGAAGATTATGCAGAATTGGTATTACAGAAAAACATTGAAAGTTTGTATGCATGTGGAGTAAATGAGAATGACATTCGCAAAACCATGAGAGATGCTATTCCTAGATTACTAAGTTGGATCATGCGGTTTAAAAATATGGAGGAAAGAAATGACCCAAATGTCAAATTTGGATTTGATAATGGACCAAAGAATGTTGGCATATCTGAGGTAATTGATATTGAAGAGATGGTGTGGGCTCCAAAATATGGATTAAAAGGGATGATTGATGCTTCAGTGAGAGTGAAAATTGAATCACAAAAGGGTGAACAAGAGGAAAAGATCATGCCAGTAGAGTTCAAGTCTGGAAAAACACCAAACAGCCAGTCATCAGTTGAGCACAGTGCCCAAGTAATTTTGTACACTCTCTTGATGTCTGAAAGGTATCAGACAACTGTTGATTCTGGTCTTCTATATTATCTCCAATCTGATCAGACACAGGGCATCGTGGTTCAAAGATCTGACTTAACTGGGCTAATAATGCAACGAAATGAACTAGCAAGTTATATTCTTAAGGCGTTGACTCTACAGCAACTGCCTCCAATGTTACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTGAATGTTTGTAGCATTTATCACAAGGCAAATGGTGGAAGCACAGAGAGCAGTGGGTTGAGAGAAGTTTTTGATTCTCTTACTAATCACATGAATTCTTCGCATTCTAAGTTTCTCCGCCAATGGGATCGATTGATTGACTTAGAAGCTAAAGAGACTAAGGTTTTAAGGAAAGAGGTGTGGCAATCACATAGTTCGAAGAGTTCAAACAGTTCAAATAGTAGTGGTCTTTCTTCTATTGTTCTTGACTCACTAGGAATACCTCCTGAGAAATCTCTCAAAGATAATCAATTCACTTATCGTTTCATACAACAAGATTCTTCTTCTAACCTCTCTGAAGTTTCCGATGTGTCTTCTAGTGCCTCATTGAAAAATGATTTAGATTCCATATTTCGAAGTGGAGATCATGTGATACTGCGTAATCAATCTACCCATCAAATTATTGCTAAAGGGGTGATATCTGATATTAGTCCAAATCATGTATCTGTTTCCTTTTCAAAGCGATTACGAATTCCTGGGAGTTCTTCCACTGTAAATGATCTCATTCAGCAGGTTTGGAGAATTGACAAGGATGAAGCTGTGACTTCCTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCGTAGTGCTCATTTGCGGCGTATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGATCTATACTCAGCCAGGACCCTGCGATATCCTATGTTTGCTCAGAGAAGAGTTTGAATTATGACCAACGTAGAGCAATTCTCAAGATACTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACGTCCACATTAGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGAACATCCATTTTGCTAACCGCCTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGGATTGATTTTGTACGAATTGGAAGACACGAAGTAGTGAATGAGGTGGTCAGAGAACACTGTCTCTCAGCAATGAGTGTACAAGGTGTTGAAGATATCAAAAGAAGGTTGGAACAAGTCAAAGTTGTCGCAGTTACTTGTCTTGGCATCTCTAGTCCCTTGCTTGCCAACACAAAGTTTGATGTATGCATTATGGATGAAGCCGGACAGACAACTTTACCAGTGTCCTTAGGTCCTCTAACGTTTGCTTCGACGTTTGTACTTGTTGGGGATCATTATCAACTGCCACCACTTGTCAATAGTACAGAAGCCCGAGAGAATGGCATGGGGGTAAGTTTGTTCTGTAGGCTCTCAGAAGCACATCCACAGGCTATTTTGGCCTTACAGAGTCAGTATCGTATGTGTCAAGACATTATGGACCTTTCAAATGCCTTGATATATGGTGATAGATTGAGGTGTGGTTCAGTTGAGGTAGCTAATGCAAAACTTGAGTTTTCAGACTTAAGCTGTGACTTGCCTTGGCTAGAACAAGTTTTGAATCCTCGAAGACCTGTGATATTTATTGATACTGACAAGTTGCCGGCTTTAGAGGCAAGAGATCAGAAGATTGTAAATAACCCAATTGAAGCTCAAATAATTGCTGAGATTGCAAAGGAATTAGTTAAAAATGGAATCGGAAAAGAACACATTGGCATTATTACTCCGTATAATTCACAGGCAAACGTCATCCGCCATTGCACGACTTCCTTGGCGATACTGACTTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAGGACTGTATATTATTATCGTTTGTAAGGTCTACCGAAAACCCATCAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTGACTCGTGCTAAGAAAAAGTTGATCATGGTAGGGTCGCGAAGAACCCTATCAAAGGTTCCTCTACTGAAACTTCTTATAAGCAAAGTTGAGGAGCAATCTGGAATTTTAAGTTTGTCTAAGAAGGATATCTATCGAAAAGGTGAGCTCAAGAGATGCTCCCAACTCAAATGA 3966 0.4309 MPPKKKKLNPQQPSKFGIQHFFDRASQKQPHLQPHTTTTTTATAASASTTATATSTSTAADTTFTSTSTAAATSTSTAAATSTSTSTAAAVTSTINSPQQPDEGSPQTRFNFSPGMLVKQSQDDGVNEVTWKISPVNERLLAVSKHTPEVIKALAASSKMNLSPIRNDSGKETCLDKVASPTPKVPLSFKRINSALDVIGQSPFRTPPSLSYRPDKVQRSKDIEHKRPCDQLLLRQNKKALLELLDQVEDAIAIDDAPVCNSNTYSFKIPQNQAYELPVKVRPAVERTKSHLPEEVVDVFSNSNYLVLEVSELRSADSSAAQCSSYKVLRLLNEQTGEERAVNLWNEWSCCVIAPGDTVHVIGQFDEGGNCDIDRDKNFLIVHPDILMSGTRVASSFSCPRRTVLDERLKNNDYSTAALAGTMLHQIFQAGLTNDHPTVSFMEDYAELVLQKNIESLYACGVNENDIRKTMRDAIPRLLSWIMRFKNMEERNDPNVKFGFDNGPKNVGISEVIDIEEMVWAPKYGLKGMIDASVRVKIESQKGEQEEKIMPVEFKSGKTPNSQSSVEHSAQVILYTLLMSERYQTTVDSGLLYYLQSDQTQGIVVQRSDLTGLIMQRNELASYILKALTLQQLPPMLQSPSICRGCRHLNVCSIYHKANGGSTESSGLREVFDSLTNHMNSSHSKFLRQWDRLIDLEAKETKVLRKEVWQSHSSKSSNSSNSSGLSSIVLDSLGIPPEKSLKDNQFTYRFIQQDSSSNLSEVSDVSSSASLKNDLDSIFRSGDHVILRNQSTHQIIAKGVISDISPNHVSVSFSKRLRIPGSSSTVNDLIQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDRSAHLRRMIVDLEAPRFDSGSILSQDPAISYVCSEKSLNYDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEVVNEVVREHCLSAMSVQGVEDIKRRLEQVKVVAVTCLGISSPLLANTKFDVCIMDEAGQTTLPVSLGPLTFASTFVLVGDHYQLPPLVNSTEARENGMGVSLFCRLSEAHPQAILALQSQYRMCQDIMDLSNALIYGDRLRCGSVEVANAKLEFSDLSCDLPWLEQVLNPRRPVIFIDTDKLPALEARDQKIVNNPIEAQIIAEIAKELVKNGIGKEHIGIITPYNSQANVIRHCTTSLAILTSLEIHTIDKYQGRDKDCILLSFVRSTENPSSCAASLLGDWHRINVALTRAKKKLIMVGSRRTLSKVPLLKLLISKVEEQSGILSLSKKDIYRKGELKRCSQLK 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00279 1321 FunFam DNA replication helicase 1096 1313 - -
Viun1g00279 1321 MobiDBLite consensus disorder prediction 29 50 - -
Viun1g00279 1321 Pfam DNA replication factor Dna2 334 536 IPR014808 -
Viun1g00279 1321 Pfam AAA domain 898 989 IPR041677 GO:0004386
Viun1g00279 1321 Pfam AAA domain 998 1065 IPR041677 GO:0004386
Viun1g00279 1321 Pfam AAA domain 1074 1278 IPR041679 -
Viun1g00279 1321 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 994 1095 - -
Viun1g00279 1321 CDD DEXXQc_DNA2 897 1097 IPR026851 GO:0017116
Viun1g00279 1321 Gene3D - 776 839 - -
Viun1g00279 1321 Gene3D - 840 990 IPR027417 -
Viun1g00279 1321 Gene3D - 995 1095 IPR027417 -
Viun1g00279 1321 PANTHER DNA2/NAM7 HELICASE FAMILY 220 1294 IPR045055 -
Viun1g00279 1321 FunFam DNA replication helicase Dna2 500 653 - -
Viun1g00279 1321 CDD SF1_C_Upf1 1098 1295 IPR047187 -
Viun1g00279 1321 Pfam Domain of unknown function DUF83 537 653 IPR022765 -
Viun1g00279 1321 MobiDBLite consensus disorder prediction 25 50 - -
Viun1g00279 1321 CDD DNA2_N-like 389 624 - -
Viun1g00279 1321 Gene3D - 1096 1312 IPR027417 -
Viun1g00279 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 1286 IPR027417 -
Viun1g00279 1321 Gene3D - 389 653 IPR011604 -
Viun1g00279 1321 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 840 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00279 Viun-Chr1 1743055 1758420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00279 1 1039 Core DNA Replication Machinery Family AT1G08840 54.032 0.0 1064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00279 K10742 - gmx:100799415 1980.3