Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00277 ATGATTAGAGAGCTTCATTCACACAGAAAAGTAACAGAAATGGGTTCTGCAACTAACTCAAATCCAAATCCAAATCCATATCCATGGACCCCAAAGGATTGTTCAGAAGGAATCTGCAGCATCTACTGCCCCCAATGGTGTTACATAGTCTACTCTCCTCCTCCTCCTTCACTCTTCCTCGGTGGTGATGATGCTGATGATGATCCTTCAGGATTTGAGTTTTCTCCTCTCATAGTTGCTGTCATTGGAATATTAGCCAGCACTTTCATCTTGGTCACATACTACACCATCATCTCAAGATTCTGCAGACGCACCACCATGCAATCCAATGAGGCTTCTTCGCCGGAAGAAGAAGATGGTGAGGTTTCTTCTTCCTCAAACTCTGGTTTGGATGAGGCTCTCATAAAATCCATCACAGTGTGCAAGTACACCAAAGGGGTGGTGGAGGGTCATGATTGTTCAGTTTGTTTGAGTGAGTTTGAAGAGAATGAGAGTCTGAGATTGTTGCCAAAATGCAACCATGCTTTTCATCTTCCCTGCATTGATCCTTGGCTGAAATCTCATGCCACTTGCCCCTTGTGCCGTTCCACCATCACCCTTGTTTCTCCTCCAAATCCTGCCATGGAAGCACCACCAAGAGTCACTGTTAATGCCTTGGAATACCAGCAAAGAAGTAGCCATGTTGTTGTTGTGGTTGTTCAGAGCTCTGAGCAGCAGGAGAAGGTGCTGAGTTTTGATTCCAACACTTTGAATGAGAGTGAAGGATAG 768 0.4505 MIRELHSHRKVTEMGSATNSNPNPNPYPWTPKDCSEGICSIYCPQWCYIVYSPPPPSLFLGGDDADDDPSGFEFSPLIVAVIGILASTFILVTYYTIISRFCRRTTMQSNEASSPEEEDGEVSSSSNSGLDEALIKSITVCKYTKGVVEGHDCSVCLSEFEENESLRLLPKCNHAFHLPCIDPWLKSHATCPLCRSTITLVSPPNPAMEAPPRVTVNALEYQQRSSHVVVVVVQSSEQQEKVLSFDSNTLNESEG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00277 255 MobiDBLite consensus disorder prediction 1 26 - -
Viun1g00277 255 FunFam E3 ubiquitin-protein ligase ATL6 118 200 - -
Viun1g00277 255 SUPERFAMILY RING/U-box 138 203 - -
Viun1g00277 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 200 IPR013083 -
Viun1g00277 255 PANTHER RING-H2 FINGER PROTEIN ATL16 69 241 IPR044600 GO:0016567|GO:0016740
Viun1g00277 255 MobiDBLite consensus disorder prediction 109 128 - -
Viun1g00277 255 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Viun1g00277 255 Pfam Ring finger domain 152 195 IPR001841 -
Viun1g00277 255 SMART ring_2 153 194 IPR001841 -
Viun1g00277 255 CDD RING-H2_EL5-like 152 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00277 Viun-Chr1 1739611 1741063 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00277 14 202 C3H Transcription Factor Family AT3G03550 52.582 9.12e-63 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00277 - - vun:114168871 519.62