Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00272 ATGAGGAAGAAGCTCGACACCCGTTTCCCCGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTCGGAAAGATAGCATTGGCAGTTCCTGTTTTAGTATCTAAAGCTCTGGAGTTATTCTTGCAAGATCTCTGTGACCGCACTTATGAAATAACTCTTCAGAGAGGAGCAAAAACCATGAATGCATTGCATTTGAAACATTGTGTACAAAGCTATAACGTCTTCGACTTTCTGAGAGACATTGTCAGCAGGGTTCCTGACTATGGGCATGGACATGGCCATTCCGAGGCCGGAGCCGATGACCGTGCCCTTTCAAAGAGAAGGAAAGCTGCTGGTGTTGAGGGCAATGAGAGTGATGAAGAGGCCAAGAGGAGTAAGATGCGCGAGTTGGGCCACGCCGGCACTCCTGGTAGAGGAAGAGGCCGAGGAAGAGGAAGAGGCCGTGGCCGAGGGGCTCGACCGGTTGAAAGAGACATCAGTGATCAGCAGGTTGAATCTGAGCCTTGCTCCTCTATTCAACAAATTAGCAATGATATTCCTAACACAAGTCTGCCAATAGATAATGGTGTGCAATCCAAGGAGGATTCAAAGGAGACTTCTGCAGTTCATGAGGAAAGTGCTCAATCTTTCCGTAACATTGATCTGAATGCTAACATAAACGAAAATGAAGACAAAAATGCTGGTGCAGCTGTTGAAGCTTCATTGCCTGAGCCTTCTGACATGGACATTAAACATGAAGTTCCAGGTTGGTCCCTATCCGATGTCGACAAGATGGCCATTGACACTATGCAATTGGCAACCCTTGGAAGTAGACTAGAAGAGGATGATGAAGATTATGATGAGGAAGGGTGA 858 0.4674 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHSEAGADDRALSKRRKAAGVEGNESDEEAKRSKMRELGHAGTPGRGRGRGRGRGRGRGARPVERDISDQQVESEPCSSIQQISNDIPNTSLPIDNGVQSKEDSKETSAVHEESAQSFRNIDLNANINENEDKNAGAAVEASLPEPSDMDIKHEVPGWSLSDVDKMAIDTMQLATLGSRLEEDDEDYDEEG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00272 285 MobiDBLite consensus disorder prediction 207 225 - -
Viun1g00272 285 SUPERFAMILY Histone-fold 4 98 IPR009072 GO:0046982
Viun1g00272 285 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Viun1g00272 285 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 118 - -
Viun1g00272 285 MobiDBLite consensus disorder prediction 91 137 - -
Viun1g00272 285 MobiDBLite consensus disorder prediction 166 192 - -
Viun1g00272 285 MobiDBLite consensus disorder prediction 151 165 - -
Viun1g00272 285 MobiDBLite consensus disorder prediction 91 248 - -
Viun1g00272 285 FunFam dr1-associated corepressor homolog 1 86 - -
Viun1g00272 285 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00272 Viun-Chr1 1670405 1674339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00272 1 274 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.379 5.11e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Viun1g00272 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00272 K21752 - gmx:100810093 444.891