Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00271 ATGGCATCTTCACATGATTTGGAAGATTATTCATCTGAAGCCTCAAGCACCTCACAAGACATTTTCCATAAACCTAGTGTTGAAGAAGGGAAGAAGCATCATGAGGTGACAACAATGAAGGAGAAAGGTATCAAATTTGAAGAAAGTAATAAGGTTTCCAATTCCAAAACCCACATGGTGTTAGATTTTGTTAAGTTTTCCAATGATCAAACACTTTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATGCCAAGGGTTCGTCTTCTAGGGCAAATCACACTCAAGGAAGAGATGAACGCAACAAAGATGAGAAGCCATCGTTAGAGACTAATAAGACCTTTTCCTGTAACTTCTGTCAGAAAGAGTTTTCTTCTTCACAAGCTTTGGGAGGACACCAGAACGCTCATAAACAAGAACGTGCCCTAGCAAAACGTAGACAAGGGATTGATGGTGGTGCTTTTGGGAACCCTAATTTTCCCTATTACCCTTATAATCCGACACACTCTTTCTATGGATCTTACAATAGGACACTTGGGATTCGAATGGAGTCAATGATTCACAAACCTATGTATCCTTCATCTTCTTCACTAGGTTTAAGGTTTGGTCAAGGGTTGTTGAGACAAGAGATGATGAACTCTTCTTCTTGTTCTTCTTCTTCTGCTGTTGTTGGTTTGCAAGCAAATGCTGGAATTAGGATTATGGGGAGTGACACAACTTTTAGGGCACAACATGATCATGGTACTACCAGACACAGTATTCCATTCCTTGCAGAATCTTCTGCAAATGTTACTGCCAAACCAAATTTGACTCCATTGAATCATGTAAAGGATAATGATGATGATCACACCAAGAAAGAAGGAACTTCAAATCCTAGTTCTTCTGATGAAATCGATTTGTCGCTTAAACTTTAG 912 0.3914 MASSHDLEDYSSEASSTSQDIFHKPSVEEGKKHHEVTTMKEKGIKFEESNKVSNSKTHMVLDFVKFSNDQTLCGSKVELDFFNAKGSSSRANHTQGRDERNKDEKPSLETNKTFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGAFGNPNFPYYPYNPTHSFYGSYNRTLGIRMESMIHKPMYPSSSSLGLRFGQGLLRQEMMNSSSCSSSSAVVGLQANAGIRIMGSDTTFRAQHDHGTTRHSIPFLAESSANVTAKPNLTPLNHVKDNDDDHTKKEGTSNPSSSDEIDLSLKL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00271 303 MobiDBLite consensus disorder prediction 1 42 - -
Viun1g00271 303 MobiDBLite consensus disorder prediction 24 42 - -
Viun1g00271 303 MobiDBLite consensus disorder prediction 86 109 - -
Viun1g00271 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Viun1g00271 303 MobiDBLite consensus disorder prediction 273 291 - -
Viun1g00271 303 MobiDBLite consensus disorder prediction 92 109 - -
Viun1g00271 303 Gene3D Classic Zinc Finger 91 150 - -
Viun1g00271 303 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 303 IPR044246 GO:0009788
Viun1g00271 303 MobiDBLite consensus disorder prediction 264 303 - -
Viun1g00271 303 MobiDBLite consensus disorder prediction 1 23 - -
Viun1g00271 303 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Viun1g00271 303 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00271 Viun-Chr1 1664671 1665582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00271 112 203 C2H2 Transcription Factor Family AT5G10970 55.319 2.35e-21 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g00271 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00271 - - gmx:102663393 337.806