Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00265 ATGTTACACATTACTGGTGGTGATTGCAGCAAAAGAAGAATGATCCATCAATGGTTGTTCATCATCAAACTGGTGTACCTCGTTGGTTGCTTTGTTTCTGGTCAGAACAGTAGCAACTCACAACAACCACTTGATTACAGATATGCATGTTTGGACCAATCTTCTGCTCCTATTTCCACTTCTTACCAAACCAACCTCAACAATTTGTTCTCTTCCCTCTCATCTCATTCTGCTACCAGCAATGGTTTTGGGAACACAACTTCGGGTGTTGATCAAGACACGGTTTATGGACTCTACCTTTGCCGTGGCGATGTTAACACCACCCTCTGCAACACTTGTGTCCAAAACTCCAGCATCTTGCTCATGAACCACTGCCTCAACAATGCCTCAGCTATTTTATGGTACCCCTTTTGTGTTGTGAGATACTCAAACCAGAATTTCTTCGGCAATCTCACCCTCAGGCCAAGGATTCCCATGTTTGATGCCACTCAGAATTCTACCAGTGCTGGAGAGTTTGATGGTGATGCTCAGGTTTTGATGAGTGGTTTGATACAAATAGGGTCTGAGGCACCCTTGAAGTTTGGAACACACATGTTCAACATAAATGGCACTCAGAGAAGGTACGGTTGGGTGCAGTGCAGCAGAGACATCACATCCGAGGAATGCAGAACATGTTTGAGCAACATGCTTGAGGATGTCGAAAATTGTTGTCAGGAGAAGAAGGTGTGGCGTATCTTTTCTCCAAGTTGTATGGTCATGTATGAAACTCAGCCTTTCTTTGTGAATGGTACTGATTCTGCACCACCACCTCAGCAAGATAGTGCAGCCACAGATGGGGATAACAGAAGGTGGTGGCTTATAGTAATCATTGTCGTAGCTGGAATTGTAGCACTAGCTCTATTGGCTATCAGCATATTCTACTGCTACTTGAAGAGGAAAAAAGAGAAACAAACTATGCAAGAGGAGGGACTGAATTCAATATTTTCACAAGAACAAACAGATAAGGAGGAGAGTATGAACACTGACCTTCCCATGATTCCTCTGGGTACTATTCTAAAATGTACAAACAATTTTTCTGATGAACAAAAACTGGGGAAAGGAGGATTTGGACCTGTCTATAAGGGTATATTACCAGATGGAAGACAAATTGCTGTTAAAAGGCTCTCAAAAACATCAGTTCAAGGTGCAGAGGAATTCAAGAATGAAGTGATATTGATTGCCAAATTGCAGCATCGCAACCTTGTGAGACTGTTGGCTGGTTGCATTGAGCAAAATGAAAAGCTGCTAGTTTATGAATTCATGCCAAATTCAAGCCTTGATTTTCACCTATTTGATACCAAGAAGGGTGTCCATCTGGATTGGAAAAATCGATTAAACATCATAAATGGGATTGCTAAAGGGCTTCTATATCTACATGAAGATTCAAGACTAAGGGTTATTCACAGAGACCTGAAAGCTAGCAACATTCTACTAGATCATGATTTGAATCCTAAAATCTCAGACTTTGGATTGGCAAGAACATTTGGAGGAGACCAGAGGCAGGCCAACACAATGAGAGTCGTTGGAACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGTTTGTTTTCAGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATCAGTGGAAAAATGAGCAGTAAATTCTATCGATCAGACCAAGGCCAAAGCCTTCTCATATATGCATGGAACCTCTGGTGTGAAAGCAAAGGGTTGGAGTTGATGGATCCATCAATAGAAAAATCGAGTGTAGAGAGTGAAGTTGTGAAGTGTATGCACATTGGACTATTGTGTGTGCAAGAAGATGCAGCAGATAGACCAACAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAATGAGTCTTCCCTGCCCCACACGCCCTGCATTTTCTGTTGGAAGAGCAGCCACTGAAAGAGAGTCTTCATCAAACACTTCTACGCATTACTCTGTCAATGAAATAACAGTCTCTGAAGTGATACCAAGGTGA 2031 0.42 MLHITGGDCSKRRMIHQWLFIIKLVYLVGCFVSGQNSSNSQQPLDYRYACLDQSSAPISTSYQTNLNNLFSSLSSHSATSNGFGNTTSGVDQDTVYGLYLCRGDVNTTLCNTCVQNSSILLMNHCLNNASAILWYPFCVVRYSNQNFFGNLTLRPRIPMFDATQNSTSAGEFDGDAQVLMSGLIQIGSEAPLKFGTHMFNINGTQRRYGWVQCSRDITSEECRTCLSNMLEDVENCCQEKKVWRIFSPSCMVMYETQPFFVNGTDSAPPPQQDSAATDGDNRRWWLIVIIVVAGIVALALLAISIFYCYLKRKKEKQTMQEEGLNSIFSQEQTDKEESMNTDLPMIPLGTILKCTNNFSDEQKLGKGGFGPVYKGILPDGRQIAVKRLSKTSVQGAEEFKNEVILIAKLQHRNLVRLLAGCIEQNEKLLVYEFMPNSSLDFHLFDTKKGVHLDWKNRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHDLNPKISDFGLARTFGGDQRQANTMRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKMSSKFYRSDQGQSLLIYAWNLWCESKGLELMDPSIEKSSVESEVVKCMHIGLLCVQEDAADRPTMSSVVHMLASDTMSLPCPTRPAFSVGRAATERESSSNTSTHYSVNEITVSEVIPR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00265 676 ProSiteProfiles Gnk2-homologous domain profile. 44 147 IPR002902 -
Viun1g00265 676 Gene3D Transferase(Phosphotransferase) domain 1 434 636 - -
Viun1g00265 676 Pfam Protein tyrosine and serine/threonine kinase 361 629 IPR001245 GO:0004672|GO:0006468
Viun1g00265 676 FunFam Cysteine-rich receptor-like protein kinase 10 157 259 - -
Viun1g00265 676 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 323 433 - -
Viun1g00265 676 CDD STKc_IRAK 364 629 - -
Viun1g00265 676 ProSiteProfiles Protein kinase domain profile. 358 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00265 676 SUPERFAMILY Protein kinase-like (PK-like) 341 660 IPR011009 -
Viun1g00265 676 Gene3D Phosphorylase Kinase; domain 1 318 433 - -
Viun1g00265 676 FunFam Cysteine-rich receptor-like protein kinase 28 46 146 - -
Viun1g00265 676 Gene3D - 158 259 IPR038408 -
Viun1g00265 676 Gene3D - 44 147 IPR038408 -
Viun1g00265 676 Pfam Salt stress response/antifungal 164 256 IPR002902 -
Viun1g00265 676 Pfam Salt stress response/antifungal 57 145 IPR002902 -
Viun1g00265 676 FunFam Liguleless narrow1 434 637 - -
Viun1g00265 676 SMART serkin_6 358 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00265 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Viun1g00265 676 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 672 - -
Viun1g00265 676 ProSiteProfiles Gnk2-homologous domain profile. 154 259 IPR002902 -
Viun1g00265 676 Pfam Domain of unknown function (DUF3403) 631 676 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00265 Viun-Chr1 1628301 1631916 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00265 40 676 Receptor kinase-like Gene Family AT4G05200 41.353 3.52e-175 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g00265 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00265 - - vra:106761555 1225.69