Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00262 ATGGCAACAAGCATTCCAAGATTTGTTGGATCCATCATGGTGACCCTTTTCACCATGGCAAGTTCACAATCCCTGAACTATGTGAATGATGACTGCCACAACTCAACAACAAAAGAACAAGCCCTAACCCTAACATTCAGCACCAACCTTAACACCACCCTCTCAAGGCTCTCTTCTGATGCTGCCACAAGCAAGGGTTACAACCACACCACCACAGGAAATGGTGATGCTGTGTATGGCCTCTATGACTGCAGAGGTGATGTCACAGGACCCTTCTGCCAGTTCTGTGTCTCCACAGCAGCCTCAGAGATTCTGCGGCAATGCCCTAACAGATCCTCTGCTGTGATATGGTACAACTATTGCATTCTCAGGTACTCAAGCCAAAACTTCTTTGGGAACCTCACCACAACCCCATCATGGGAAATTGTGGAGAACTCCAAGAACACCACTGACCCACAAGAGCTTCAGCAAGCTGAGAGCTACATGCAAAGCCTGAAGAGAGAAGCCACTGTGGAGACCAACAAGTTGTATGCAATGGGAGGGTTCAATTTGAGTGATGGTGAGGAAAGGTTTGGGTTGGTGCAGTGCAGTAGGGACCTCACCAATGATGAGTGCAGCCAGTGTTTGGAGGCCATGATTGAAAAAATTCCTCAGTGTTGTGCTACAAAGAGAGCATGGCAGGTTTTGGCTCCAAGTTGCCTTATAAAGTATGATGATTTCATGTTCTACCAGATTACAGATCAAACTTCTTCTCCTTTGCCTAATCCAGCTAAGAAGGGAGGTTCAATTAGCTCAAAAACATTGATCATAATCATTGTGAGTGTATTGGTGGTGGCACTAATTTTTCTAAGTTGCTGTGTCTACTACTTGTGGAGAAAGTATTTGAGAAATAAAGATGGATGGATATCAGTGAACATCCCTAGATCTTTTCGTGGCCATGTTCAAAGAGAGGAAGTACTGAATTCAGACCTTCCAACAATCCCTTTAATCTGGATTCAACAGAGCACTAATTACTTTTCAGAGTTGTCTAAATTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTAATTTAGAAGATGGAACAGAAGTTGCTGTCAAAAGACTCTCTAAAGCATCAAATCAAGGTTTGGAGGAGTTCAAGAATGAAGTGATCTTCATAGCCAAACTGCAACATAGGAACCTTGTGAGACTCTTGGGATGCTGGATTGAGGAAAATGAAAAGCTGCTTGTGTACGAGTACATGCCAAATTCTAGCCTTGACTCTCATTTGTTCAATGAGGAAAAAAGACAGCAACTAGATTGGACGTTAAGACTGAGTATTATCAATGGAATTGCAAAAGGACTTCTGTATCTACATGAAGACTCCAGACTTAGAATAATACATAGAGATCTAAAAGCCAGCAATGTTCTTCTTGATCAAGAGATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAACATTTGAGAAAGGCCAGAGTCAAGAAAATACAAGGAGAGTTATGGGCACCTATGGATACATGGCTCCAGAATATGCAATGGAAGGATTGTATTCAGTAAAATCTGATGTTTTTGCTTTTGGAGTTCTTCTACTAGAAATCATACATGGAAAAAGGAACAGTGGATTCCATCTTTCAGAACATGGCCAAAGTCTTCTTGTATATAGTTGGAGACTTTGGAGTGAAGGAAAAAGCTTGGAAATGTTAGATCCAGTGCTGGAAAAGACATACAAAGCCAATGAAGTTATGAAATGCATACATATCGGTCTGTTGTGTGTTCAAGAAGATGCAGCTGATAGACCAACCATGTCCACAGTTGTTGTCATGCTGGCAAGTGATACAATGGCCCTTCCAAACCCTAATCATCCTGCATTTTCAGTTGGAAGAAAGATCAAAGATGAAGAATCAACATCAAAAGGATCCAAGGATCCTTCTGTTAATGATCTAACAATATCAAACATTTCACCAAGGTAG 1974 0.4149 MATSIPRFVGSIMVTLFTMASSQSLNYVNDDCHNSTTKEQALTLTFSTNLNTTLSRLSSDAATSKGYNHTTTGNGDAVYGLYDCRGDVTGPFCQFCVSTAASEILRQCPNRSSAVIWYNYCILRYSSQNFFGNLTTTPSWEIVENSKNTTDPQELQQAESYMQSLKREATVETNKLYAMGGFNLSDGEERFGLVQCSRDLTNDECSQCLEAMIEKIPQCCATKRAWQVLAPSCLIKYDDFMFYQITDQTSSPLPNPAKKGGSISSKTLIIIIVSVLVVALIFLSCCVYYLWRKYLRNKDGWISVNIPRSFRGHVQREEVLNSDLPTIPLIWIQQSTNYFSELSKLGEGGFGPVYKGNLEDGTEVAVKRLSKASNQGLEEFKNEVIFIAKLQHRNLVRLLGCWIEENEKLLVYEYMPNSSLDSHLFNEEKRQQLDWTLRLSIINGIAKGLLYLHEDSRLRIIHRDLKASNVLLDQEMNPKISDFGLARTFEKGQSQENTRRVMGTYGYMAPEYAMEGLYSVKSDVFAFGVLLLEIIHGKRNSGFHLSEHGQSLLVYSWRLWSEGKSLEMLDPVLEKTYKANEVMKCIHIGLLCVQEDAADRPTMSTVVVMLASDTMALPNPNHPAFSVGRKIKDEESTSKGSKDPSVNDLTISNISPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00262 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Viun1g00262 657 Coils Coil 657 657 - -
Viun1g00262 657 Pfam Salt stress response/antifungal 32 127 IPR002902 -
Viun1g00262 657 Pfam Salt stress response/antifungal 155 238 IPR002902 -
Viun1g00262 657 SUPERFAMILY Protein kinase-like (PK-like) 325 625 IPR011009 -
Viun1g00262 657 ProSiteProfiles Protein kinase domain profile. 339 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00262 657 FunFam Liguleless narrow1 415 618 - -
Viun1g00262 657 ProSiteProfiles Gnk2-homologous domain profile. 137 242 IPR002902 -
Viun1g00262 657 Pfam Protein tyrosine and serine/threonine kinase 343 609 IPR001245 GO:0004672|GO:0006468
Viun1g00262 657 CDD STKc_IRAK 345 610 - -
Viun1g00262 657 Gene3D - 24 130 IPR038408 -
Viun1g00262 657 Gene3D - 139 242 IPR038408 -
Viun1g00262 657 FunFam Cysteine-rich receptor-like protein kinase 28 28 129 - -
Viun1g00262 657 Pfam Domain of unknown function (DUF3403) 612 657 IPR021820 GO:0004674
Viun1g00262 657 MobiDBLite consensus disorder prediction 642 657 - -
Viun1g00262 657 Gene3D Transferase(Phosphotransferase) domain 1 415 619 - -
Viun1g00262 657 MobiDBLite consensus disorder prediction 627 641 - -
Viun1g00262 657 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Viun1g00262 657 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 308 414 - -
Viun1g00262 657 MobiDBLite consensus disorder prediction 621 657 - -
Viun1g00262 657 Coils Coil 155 175 - -
Viun1g00262 657 Gene3D Phosphorylase Kinase; domain 1 305 414 - -
Viun1g00262 657 SMART serkin_6 339 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00262 657 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00262 Viun-Chr1 1610715 1614724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00262 20 627 Receptor kinase-like Gene Family AT4G23230 44.498 6.96e-175 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g00262 PK_Tyr_Ser-Thr 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00262 - - mtr:25490357 889.797