Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00254 ATGCTACTCTTTTTTTGTATTGAGAAAAGAGATCTTGGAGCATTATTGGTGAAATCTGTGGAAGGTTTGTGTTGGATGAGTGAGCAAAAGATGGGGTTTGAACCATTGAATTGGTACTGCAAGCCAGCAGAAAACAGCATTTGGGATAAAGCAGTGGATAGTGCTTTTGGACCCTATACACCTTGTGCAATCAACACTCTTGTTATCTCCATTTCCAATTTGGTTCTTATAGGCCTGTGCTTGTATAGGATATGGCTTATCACTTGCAATGCAAAGGTGCAGAGGTTTTGTTTGAGATCAAATTACTATAATTATCTTCTGGGAATGTTGGCTGCTTATTGTGCTGCTCAACCTTTGTTGAGATTGTTAACTGGAAATTCAGCTTTCAACCTCAGTGGTGAAACCAGCTTCGCTCCTTTTGAGATAGCGGCACTGCTTGTTGAAACACTTACTTGGAGCTCAATGATAACTCTCATTCTCTTGGAAACAAAGGTTTATATCAGAAAATTTAGATGGTTGGTGCGTTGTGGAGTTATGTATGTTTTGGTGGGAGATATTGTAGTGCTTAACCTTCTTCTATCAGTGAAAGATTACTGCAGCAGATCTGCTCTGTTTCTGTACATTAGCAGTGTCATCTGCCAGGTGTTGTTTGGTGCCTTACTTTTTGTTTACATTCCTAATTTGGTTCCTTATTCTGGTCATTCAACAATGCAAACTGATGCACCCGACCATGGTGAATATGAACCTCTTTGTGGAGAAGATCAAGTTTGCCCTGAGAGGCAAGCCAATGTGTTCTCTAGAATATCTTTTGGATGGATAACTCCACTCATGAAGCAAGGCTACAGAAAACCCGTAACTGAAAAGGATGTTTGGAAGCTAGACAAATGGGATGAAACAGAGACATTAACTGAGAAGTTCCAAAACTGTTGGATGTTAGAATTTCAAAGCTCTAACCCATGTCTTTTAAGAGCATTGAACAGTAGCCTGGGGAAAAGGTTTTGGATGGGAGGCTTCTTTAAGATTGGTAATGATCTTTCTCAGTTTGTGGGACCTATTTTGCTGAATCACCTCTTAGATTCAATGCAAAGAGGAGATCCATCCTGGATTGGTTATATCTACGCCTTCTCTATATTTGTTGGAGTGACAGCTGGTGTTCTTTGTGAAGCACAGTATTTTCAGAATGTTATGCGTGTCGGTTTTCGGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCCTTAAGGCTAACTAATGATGGTCGAAAGAAGTGCTCATCTGGGAAGCTTATGAATATGATAACAACAGATGCCAATGCATTGCAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTCCGTATCACTGTAGCTATGGTTCTCCTCTACCAGCAACTAGGGGTTGCTTCACTTATTGGATCACTAATGTTAGTCCTTATTATCCCACTGCAGACATTTGTTATTAGCAAGATGCGAAAATTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTGATGAATGAAATTCTTGCTGCCATGGATACTGTAAAATGTTATGCATGGGAAACAAGCTTTCAGTCTAGAATTCTAAGCATACGAGATGACGAACTATCATGGTTCCGCAAAGCCCAACTGCTATATGCTCTTAATTCTTTTATACTAAACAGCATCCCTGTTCTTGTGACGGTGACCACATTTGGAATTTTCACTTTACTGGGTGGAGAATTGACACCTGCAAGAGCATTTACCTCACTATCTCTGTTTGCAGTTTTGCGCTTTCCTTTAAATATGCTACCAAACTTACTCAGTCAGGTAGCAAATGCAAATGTCTCGTTACAGCGTTTGGAGGAACTGTTCTTAGCTGAGGAACGAGATTTAAAACAAAATCCACCTATTGAACCTGGTCTTCCAGCCATCTCTATTGAGAATGGATACTTTTCGTGGGATCCTAAGGAGGAGAAACCAACATTATCAAATATCAATGTGGAAATACCAGTAGGCAGCTTAGTTGCAATCATTGGTGGTACTGGAGAAGGCAAAACGTCTCTTATTTCAGCAATGATTGGAGAGTTACCACCTTTAGCCGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTGCCTCAGATTTCATGGATTTACAATGCCACAGTTCGTGAAAACATACTATTTGGATCAAAATTTGAGCATGAACGATATCGGAAGGTCATTGATATCACTGCTTTACAGCATGATCTCAACTTACTACCTGGACTTGATTTTACAGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCATAGCTAGGGCTGTATACTCAAATTCAGATGTATATATATTTGATGATCCATTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGACTGCGAGGAAAAACCAGAGTTCTTGTCACCAATCAGCTACATTTTCTCCCTCAGGTGGATAAAATCATTCTGGTTAGTGAAGGCATGATTAAGGAGCAGGGAACATTTGAGGAGTTATCAAAAAGTGGGCCTCTATTTCAGAGACTAATGGAAAATGCTGGGAAAATGGAACAACAAGCAGATAATAATGGAGATAGTGAAAGTCATGACAAGGATACAAATTTACCCTTGAATAATGAAGCAATTGTTGAATTACCAAGTGATGTAAGCTATGAGAAGAAAGGAAAATTACGAAAATCAGTACTTGTTAAGAAAGAGGAAAGGGAAACAGGCGTGGTTAGTTGGAAAGTTATAATGAGGTACAAATCAGCACTGGGAGGACTGTGGGTAGTTTCCATACTCTTTGGATGTTACACATTAACAGAAGTTCTTCGAATTTCAAGTAGCACATGGTTAAGCGTGTGGACATCTCAAGATTCCACTGCAGATAATAATCCGGCATATTTTCTTTTGATCTATGCACTTTTCTCTTTTGGACAGGTATCTGTGGCACTTGCCAACTCTTATTGGTTGATCGTTTCAAGTCTTCGTGCTGCCAAAAGATTGCACAATGCAATGCTGGATAAGATCCTCCGAGCTCCTATGGTATTCTTCCAAACTAATCCGGTTGGTCGGATAATTAATAGGTTTGCAAAAGATACGGGAGATATAGATACCAATGTTTTTAACTTGATGAACACGTTTCTGGGGCAAGTTTGGCAACTGCTTTCCACATTTGTTCTTATAGGCACTGTGAGCACCATTTCCCTGTGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTATCAGAGCACGGCTCGAGAGGTAAAGCGCATGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGTGAATCATTGAATGGTTTGTCAAGCATCCGTGCTTATAAAGCATATGACAGAATGGCACACATCAATGGAAAATTCATGGATAACAACATCAGATTCACTCTTGTGAACATAAGTTCAAACCGTTGGCTCACCATAAGGCTAGAAGCATTAGGAGGCCTCATGATTTGGCTGATAGCAACATCTGCAGTCATGCAGAATGCAAGAGCTTCAAACCAGGCTTTGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTAAACATAACAAATCTCTTAAGTGGTGTCCTTAGGCAAGCAAGTAGAGCTGAAAATAGTTTCAATGCTGTTGAGCGTGTTGACACATATATAAATTTGGAAACTGAGGCTGCAGGTGTAATTGAGACCAACCGTCCCCCACCCGGATGGCCAACCTCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCTGAACTTCCTCCGGTGCTGCATGGATTGTCCTTCACGGTACCTCCAACTGAGAAGATAGGAGTAGTTGGAAGAACTGGTGCAGGAAAATCTAGCATGCTTAATGCATTATTTCGGATTGTGGAACTGACAAAAGGAAGAATCATCATTGATGGTTGTGATATTTCCACATTTGGACTAGCAGATCTACGAAAAGTTCTTACTATCATACCACAGTCTCCAGTTCTTTTCTCTGGGACTGTTCGTTTCAATCTTGATCCATTTAATGAGCACAATGATGCTGACCTTTGGGAGGCTTTAGAAAGGGCACATCTGAAGGACGTAATAAGAAGAAATCCATTTGGTCTTGATGCTCAGGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTGCTGAGTCTAGGTAGAGCATTGCTTCGAAGATCGAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACTGATGCCCTTATACAGAAAACTATCAGACAGGAGTTTCAGTCATGTACAATGCTCATCATTGCACATAGACTAAATACAATCATTGACTGCAATCGGATTCTGCTGCTTGATTCTGGCCGGGTTCTTGAATACAGTTCACCAGAGGAACTCCTACAAAATGAAGGAACTGCTTTCTACAAGATGGTTCAAAGTACTGGTGAAGCAAATGCTGAGTATCTATGTAGCCTAGTATTTGGAAGAACAGAGAACAATAATGAATATAACAAGGAGTTGGAAAACCATATGAGACAACTAGCTTCTACTCACTGGACTGCTGCTACCCAGTTTGCCATAGCTGCTACTCTTTCTTCATTACACCATCTGCTTCCAAAACCAAGTAGTGAAGACAATGAAGATATCCTTCATAAAACAAAGGATGCAGTTACAATACTTCAAGAGGTTCTGGTGGGAAAGCATGATGAAGCCATAGAAGAGACACTGCATAGATACCATATTCCTAAAGATAGATGGTGGTCTACTCTCTACAAAGTTATTGAAGGTCTTGCTATCTTGAAGAGGTTGCCTAAAGACAACATTCATCAAATACAACTTGATTTTGATGAAAGATCTTTTAATTAA 4938 0.402 MLLFFCIEKRDLGALLVKSVEGLCWMSEQKMGFEPLNWYCKPAENSIWDKAVDSAFGPYTPCAINTLVISISNLVLIGLCLYRIWLITCNAKVQRFCLRSNYYNYLLGMLAAYCAAQPLLRLLTGNSAFNLSGETSFAPFEIAALLVETLTWSSMITLILLETKVYIRKFRWLVRCGVMYVLVGDIVVLNLLLSVKDYCSRSALFLYISSVICQVLFGALLFVYIPNLVPYSGHSTMQTDAPDHGEYEPLCGEDQVCPERQANVFSRISFGWITPLMKQGYRKPVTEKDVWKLDKWDETETLTEKFQNCWMLEFQSSNPCLLRALNSSLGKRFWMGGFFKIGNDLSQFVGPILLNHLLDSMQRGDPSWIGYIYAFSIFVGVTAGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTNDGRKKCSSGKLMNMITTDANALQQICQQLHGLWSAPFRITVAMVLLYQQLGVASLIGSLMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRILSIRDDELSWFRKAQLLYALNSFILNSIPVLVTVTTFGIFTLLGGELTPARAFTSLSLFAVLRFPLNMLPNLLSQVANANVSLQRLEELFLAEERDLKQNPPIEPGLPAISIENGYFSWDPKEEKPTLSNINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPLADGNATIRGTVAYVPQISWIYNATVRENILFGSKFEHERYRKVIDITALQHDLNLLPGLDFTEIGERGVNISGGQKQRVSIARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLRGKTRVLVTNQLHFLPQVDKIILVSEGMIKEQGTFEELSKSGPLFQRLMENAGKMEQQADNNGDSESHDKDTNLPLNNEAIVELPSDVSYEKKGKLRKSVLVKKEERETGVVSWKVIMRYKSALGGLWVVSILFGCYTLTEVLRISSSTWLSVWTSQDSTADNNPAYFLLIYALFSFGQVSVALANSYWLIVSSLRAAKRLHNAMLDKILRAPMVFFQTNPVGRIINRFAKDTGDIDTNVFNLMNTFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLEALGGLMIWLIATSAVMQNARASNQALFASTMGLLLSYTLNITNLLSGVLRQASRAENSFNAVERVDTYINLETEAAGVIETNRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELTKGRIIIDGCDISTFGLADLRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLGRALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDSGRVLEYSSPEELLQNEGTAFYKMVQSTGEANAEYLCSLVFGRTENNNEYNKELENHMRQLASTHWTAATQFAIAATLSSLHHLLPKPSSEDNEDILHKTKDAVTILQEVLVGKHDEAIEETLHRYHIPKDRWWSTLYKVIEGLAILKRLPKDNIHQIQLDFDERSFN 1645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00254 1645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 645 869 IPR003439 GO:0005524
Viun1g00254 1645 CDD ABC_6TM_ABCC_D2 948 1244 IPR044726 GO:0140359
Viun1g00254 1645 Gene3D - 628 895 IPR027417 -
Viun1g00254 1645 Coils Coil 604 624 - -
Viun1g00254 1645 ProSitePatterns ABC transporters family signature. 771 785 IPR017871 GO:0005524|GO:0016887
Viun1g00254 1645 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 259 1510 - -
Viun1g00254 1645 Pfam ABC transporter transmembrane region 334 601 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g00254 1645 Pfam ABC transporter transmembrane region 950 1200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g00254 1645 Gene3D ABC transporter type 1, transmembrane domain 910 1250 IPR036640 GO:0005524|GO:0016020
Viun1g00254 1645 Gene3D ABC transporter type 1, transmembrane domain 321 627 IPR036640 GO:0005524|GO:0016020
Viun1g00254 1645 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 950 1232 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g00254 1645 FunFam ABC transporter C family member 2 912 1250 - -
Viun1g00254 1645 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 334 613 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g00254 1645 Gene3D - 1252 1505 IPR027417 -
Viun1g00254 1645 CDD ABCC_MRP_domain1 645 845 - -
Viun1g00254 1645 Pfam ABC transporter 1286 1434 IPR003439 GO:0005524
Viun1g00254 1645 SUPERFAMILY ABC transporter transmembrane region 322 621 IPR036640 GO:0005524|GO:0016020
Viun1g00254 1645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 868 IPR027417 -
Viun1g00254 1645 Pfam ABC transporter 663 798 IPR003439 GO:0005524
Viun1g00254 1645 SUPERFAMILY ABC transporter transmembrane region 933 1249 IPR036640 GO:0005524|GO:0016020
Viun1g00254 1645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1259 1502 IPR027417 -
Viun1g00254 1645 SMART AAA_5 1295 1488 IPR003593 GO:0016887
Viun1g00254 1645 SMART AAA_5 672 852 IPR003593 GO:0016887
Viun1g00254 1645 FunFam ABC transporter C family member 2 309 630 - -
Viun1g00254 1645 FunFam ABC transporter C family member 2 639 885 - -
Viun1g00254 1645 ProSitePatterns ABC transporters family signature. 1406 1420 IPR017871 GO:0005524|GO:0016887
Viun1g00254 1645 FunFam Multidrug resistance-associated protein member 4 1253 1505 - -
Viun1g00254 1645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1269 1503 IPR003439 GO:0005524
Viun1g00254 1645 CDD ABC_6TM_ABCC_D1 336 621 IPR044746 GO:0140359
Viun1g00254 1645 CDD ABCC_MRP_domain2 1267 1487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00254 Viun-Chr1 1560329 1574305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00254 652 868 Calmodulin-binding Proteins AT2G36910 28.017 2.19e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00254 - K05665 vun:114175221 3244.14