Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00248 ATGCTTTTTCATCAACTCAATATGGAAGAAAAAATAGACACTGCAGACAAGAAGGTGCTGGCTGATATTGTAAAATTGGCACAAAAGAGAGGCCTGAGGGGTAAGCTAGGAGACTGGAAAGAATTCTTGGACAGTCATGACAAAAAGTTTGGGGCCAATTTGAGTGATCCATCAAAGCGACCCCATGAGTTATTGGCAACATTTCTAAAGTCTTTTTCGGAGGACGAACATTTGAAGTTTTTTGATAACATCATGCGACATCATGCAAATCAATACTTGTTGGAGCGGATGAAAGATAAATCCCACGATTCCCCGGAACAGAGGCTAGTTCAAATAACTCTGCAGCATCCGTTATATCCATTGGACTATTCATTTCCATCAATTGATGAGGGGTGGATAGTTATAAATGTTAAAAACAAGCCCAAGGTGTTGAAGTCTACTACAATGCTAGCTGTTGATTGTGAAATGGTTCTTTGTGAAGATGGGACAGAAGCGGTAGTTAAAGTCTGTGTGGTGGACCATAATTTAGAGGTCAAGCTGAATGAATTCGTAAAACCCAACAAAAAAATTGTGGACTACAGAACAGAGATCACTGGTATCTCTTCTCAAGATCTAGAGGCAGTGACTTGCTCATTGGCTGATATACAGAAATCCCTGAAGAAGTTGTTATCAAAAGGAACAATATTAGTGGGACACAGCTTGCATAATGATCTACATGTGCTGAAGCTTGATCATGTCAGAGTCATTGACACTTCCTATATCTTCCAATCCGTGAATGGGTCTATGCACAGAAGACCTTCTTTGAATGGTTTGTGTCAGGCTGTTTTGGGTTGTGCTGTTCGGGAAAAAGGTGTTCCACATAATTGTCTAGATGATGCACGTGCAGCTATGAAGCTGGTTCTTGCAAAGATCAAACATGGCGTTGATAAGGAATTTCCAATTTCACTGGCTCAAGAGCGTGTTCCAGAAAATGAGACAGCAAAGCTTTTTCTTCACATGATACCAAATACCTTAAACACTGAAGCACTGCATACCATTATTCCTGGAGAATTCAGAACAGAACTGCAGCCTAACAGGAAAGGTCCAGGAAGACATTATTCTGCCTTAGCTGTTTTTAAAAATACACAAGAGGCTGATGATGCCTTTGAGAAAGTCCAAGGAATCCTGTTAAAGGATAATCAAGGGCGTCCACAGAAACTTGTAACATTACTGTCAAGTAAAGTCATGCCTGTCACTCTATATGTTCGGAAAATGGCAAGTGATGAACCCAATGACCAGACTGAATCTAATAAGAGGGCTTTACAAACGGATGAGGCAGTTGATGTTTCCAAGAAAGCAAAGATAGATCAAAACACTGAAGAGGATGCCCATTTAAAAGAGATTGAAGCACTGAATCAAAGATTAAAGCAAAGTGAATTGGAGATCGAATCATTGAAGAAAGAGCTGACACAAAAAGATTTTGAAATATCCACGCTGCATAAAATGGTAGCCTCTTTAAATAAGCGAAGAAAGTAA 1515 0.3974 MLFHQLNMEEKIDTADKKVLADIVKLAQKRGLRGKLGDWKEFLDSHDKKFGANLSDPSKRPHELLATFLKSFSEDEHLKFFDNIMRHHANQYLLERMKDKSHDSPEQRLVQITLQHPLYPLDYSFPSIDEGWIVINVKNKPKVLKSTTMLAVDCEMVLCEDGTEAVVKVCVVDHNLEVKLNEFVKPNKKIVDYRTEITGISSQDLEAVTCSLADIQKSLKKLLSKGTILVGHSLHNDLHVLKLDHVRVIDTSYIFQSVNGSMHRRPSLNGLCQAVLGCAVREKGVPHNCLDDARAAMKLVLAKIKHGVDKEFPISLAQERVPENETAKLFLHMIPNTLNTEALHTIIPGEFRTELQPNRKGPGRHYSALAVFKNTQEADDAFEKVQGILLKDNQGRPQKLVTLLSSKVMPVTLYVRKMASDEPNDQTESNKRALQTDEAVDVSKKAKIDQNTEEDAHLKEIEALNQRLKQSELEIESLKKELTQKDFEISTLHKMVASLNKRRK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00248 504 SMART exoiiiendus 148 309 IPR013520 -
Viun1g00248 504 Pfam Exonuclease 151 299 IPR013520 -
Viun1g00248 504 Coils Coil 454 488 - -
Viun1g00248 504 FunFam Small RNA degrading nuclease 3 144 318 - -
Viun1g00248 504 MobiDBLite consensus disorder prediction 419 438 - -
Viun1g00248 504 Gene3D - 144 319 IPR036397 GO:0003676
Viun1g00248 504 SUPERFAMILY Ribonuclease H-like 149 305 IPR012337 -
Viun1g00248 504 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 322 IPR047021 GO:0004527
Viun1g00248 504 CDD REX1_like 150 301 IPR034922 -
Viun1g00248 504 MobiDBLite consensus disorder prediction 421 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00248 Viun-Chr1 1554345 1559649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00248 145 245 C2H2 Transcription Factor Family AT3G27970 30.172 9.40e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00248 K14570 - gmx:100785565 751.51