Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00247 ATGGAAGAAAAAATAGACACTGCAGACAAGAAGGTGCTGGCTGATATTGTAAAATTGGCACAAAAGAGAGGCCTGAGGGGTAAGCTAGGAGACTGGAAAGAATTCTTGGACAGTCATGACAAAAAGTTTGGGGCCAATTTGAGTGATCCATCAAAGCGACCCCATGAGTTATTGGCAACATTTCTAAAGTCTTTTTCGGAGGACGAACATTTGAAGTTTTTTGATAACATCATGCGACATCATGCAAATCAATACTTGTTGGAGCGGATGAAAGATAAATCCCACGATTCCCCGGAACAGAGGCTAGTTCAAATAACTCTGCAGCATCCGTTATATCCATTGGACTATTCATTTCCATCAATTGATGAGGGGTGGATAGTTATAAATGTTAAAAACAAGCCCAAGGTGTTGAAGTCTACTACAATGCTAGCTGTTGATTGTGAAATGGTTCTTTGTGAAGATGGGACAGAAGCGGTAGTTAAAGTCTGTGTGGTGGACCATAATTTAGAGGTCAAGCTGAATGAATTCGTAAAACCCAACAAAAAAATTGTGGACTACAGAACAGAGATCACTGGTATCTCTTCTCAAGATCTAGAGGCAGTGACTTGCTCATTGGCTGATATACAGAAATCCCTGAAGAAGTTGTTATCAAAAGGAACAATATTAGTGGGACACAGCTTGCATAATGATCTACATGTGCTGAAGCTTGATCATGTCAGAGTCATTGACACTTCCTATATCTTCCAATCCGTGAATGGGTCTATGCACAGAAGACCTTCTTTGAATGGTTTGTGTCAGGCTGTTTTGGGTTGTGCTGTTCGGGAAAAAGGTGTTCCACATAATTGTCTAGATGATGCACGTGCAGCTATGAAGCTGGTTCTTGCAAAGATCAAACATGGCGTTGATAAGGAATTTCCAATTTCACTGGCTCAAGAGCGTGTTCCAGAAAATGAGACAGCAAAGCTTTTTCTTCACATGATACCAAATACCTTAAACACTGAAGCACTGCATACCATTATTCCTGGAGAATTCAGAACAGAACTGCAGCCTAACAGGAAAGGTCCAGGAAGACATTATTCTGCCTTAGCTGTTTTTAAAAATACACAAGAGGCTGATGATGCCTTTGAGAAAGTCCAAGGAATCCTGTTAAAGGATAATCAAGGGCGTCCACAGAAACTTGTAACATTACTGTCAAGTAAAGTCATGCCTGTCACTCTATATGTTCGGAAAATGGCAAGTGATGAACCCAATGACCAGACTGAATCTAATAAGAGGGCTTTACAAACGGATGAGGCAGTTGATGTTTCCAAGAAAGCAAAGATAGATCAAAACACTGAAGAGGATGCCCATTTAAAAGAGATTGAAGCACTGAATCAAAGATTAAAGCAAAGTGAATTGGAGATCGAATCATTGAAGAAAGAGCTGACACAAAAAGATTTTGAAATATCCACGCTGCATAAAATGGTAGCCTCTTTAAATAAGCGAAGAAAGTAA 1494 0.3989 MEEKIDTADKKVLADIVKLAQKRGLRGKLGDWKEFLDSHDKKFGANLSDPSKRPHELLATFLKSFSEDEHLKFFDNIMRHHANQYLLERMKDKSHDSPEQRLVQITLQHPLYPLDYSFPSIDEGWIVINVKNKPKVLKSTTMLAVDCEMVLCEDGTEAVVKVCVVDHNLEVKLNEFVKPNKKIVDYRTEITGISSQDLEAVTCSLADIQKSLKKLLSKGTILVGHSLHNDLHVLKLDHVRVIDTSYIFQSVNGSMHRRPSLNGLCQAVLGCAVREKGVPHNCLDDARAAMKLVLAKIKHGVDKEFPISLAQERVPENETAKLFLHMIPNTLNTEALHTIIPGEFRTELQPNRKGPGRHYSALAVFKNTQEADDAFEKVQGILLKDNQGRPQKLVTLLSSKVMPVTLYVRKMASDEPNDQTESNKRALQTDEAVDVSKKAKIDQNTEEDAHLKEIEALNQRLKQSELEIESLKKELTQKDFEISTLHKMVASLNKRRK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00247 497 SMART exoiiiendus 141 302 IPR013520 -
Viun1g00247 497 CDD REX1_like 143 294 IPR034922 -
Viun1g00247 497 Gene3D - 137 312 IPR036397 GO:0003676
Viun1g00247 497 MobiDBLite consensus disorder prediction 414 431 - -
Viun1g00247 497 Pfam Exonuclease 144 292 IPR013520 -
Viun1g00247 497 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Viun1g00247 497 Coils Coil 447 481 - -
Viun1g00247 497 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 315 IPR047021 GO:0004527
Viun1g00247 497 FunFam Small RNA degrading nuclease 3 137 311 - -
Viun1g00247 497 MobiDBLite consensus disorder prediction 412 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00247 Viun-Chr1 1554345 1559649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00247 138 238 C2H2 Transcription Factor Family AT3G27970 30.172 1.01e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00247 K14570 - gmx:100785565 751.51