Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00242 ATGAAGTATTTGATGCGCCGGCATCCTTGTGGCATGTATAGGATAACAAGTGACAATTCAATTGAAAGATTGAAAGATCCAAAATCAACATCCAGCACCAAATCACTTGTTGACAGGCAAGAAAATGTAAGCTATAAAGAAATGTTTCCAGGAAGTGAAGAGGAAGAACGTTCTCTTCAGATGTCCAGGTCTTCATCAAGTGATATGTTGACATCAACTGGAGCCTCAAGCCAGTGGAGTACAGAAATCTCCAATTATAGTTTTGGAAGCTTCCGGTATGGTCATCAATACCAAGAGGGAAATTTCTATTCAAATATAGAACAAGAAACAGCAGGGAACCGATCACTATTTCACATTTCAGAGAATGAAGAAATGAACCAATTGGAAGTAAATGAAAAAGAGAAACACGGTGGAAGTAATGAAAAATCTCATATGGAGGAAGAATTTACAAATCCACTCTGTTCTGTGTGCAATAATCGACGACCAAAAGTTGGATTTCAGATAGATTTCACTTATGCAGAGCTCTTTGCTGCTACAAAAGGATTTTCTCCCAGTAACTTTCTGTCAGAAGGGGGATTTGGATCTGTCTACAAAGGACTGCTTAATGGAATGAAGATTGCTGTTAAGCAACATAAAAATGCAGGCTTCCAAGGAGAGAAGGAGTTTAAGTCTGAAGTAAATTTACTTAGCAAAGCAAGACATGAGAATGTGGTTGTGCTGCTAGGTTCATGCTCAGAAGGAACTAATAGGCTTCTTGTGTATGAATATGTTTGCAATGGCTCACTTGATCAACATCTATCAGAACATTCTCGGTCACCTCTTAGTTGGGAAGATAGGATCAATATAGCAATTGGAGCTGCCAAAGGCTTATTATACTTGCACAAGAATAAAATGATACACAGAGATGTGAGACCAAACAATATCCTTATAACACATGATCATCGACCATTGATAGGAGACTTTGGATTAGCAAGAAGTCAAAATGAAAACTCGATACACTCAACCGAAGTTGTTGGAACTTTGGGGTATTTGGCACCAGAATATGCAGAACATGGAAAAGTGTCAAGCAAAACAGATGTATACTCTTTTGGAGTGGTTCTACTACAGCTAATAACAGGCATGAGAACTACAGATAAAAGACTTGGAGGAAGAAGTCTTGTGGGATGGGCAAGGCCACTTTTAAAAGAGAGGAACTATCCAGATTTAATTGATGAAAGGATCATTAAGGCTCATGATGTCCATCAACTATTTTGGATGGTTCGAATAGCTGAGAAATGTCTAAGCAGAGAACCTCAAAGGAGACTAAATATGATTCAGGTTGTTGATGCTTTAACTGACATTGTGGAAGGCAGAACATGTGACAGCATCTTAACAGATTACTCCCCAGCAAGATCAGATTCGAATTATAGTGCATCAGACTCTGATGAATCTGAAGATGAAATGAAGGAATCCACCAAGTTTGAAGATGAATCACCAACTCAGAGTTCAGAATCCATAGATAGTAATAGCATAAGTCAGATGATGCACATGAATTTAAGACAGCCACCATCTCCTCCAATTCAGAGCATCTCTCTAAGTAGCTCAGGCTCGTATAATTCTCATGATGAGTCAACTAGTGATGGTGAAGCAATAGAAATATCAAAATCCAATGAGGGTTGCTCAATTCTTAGATGCTAG 1677 0.3858 MKYLMRRHPCGMYRITSDNSIERLKDPKSTSSTKSLVDRQENVSYKEMFPGSEEEERSLQMSRSSSSDMLTSTGASSQWSTEISNYSFGSFRYGHQYQEGNFYSNIEQETAGNRSLFHISENEEMNQLEVNEKEKHGGSNEKSHMEEEFTNPLCSVCNNRRPKVGFQIDFTYAELFAATKGFSPSNFLSEGGFGSVYKGLLNGMKIAVKQHKNAGFQGEKEFKSEVNLLSKARHENVVVLLGSCSEGTNRLLVYEYVCNGSLDQHLSEHSRSPLSWEDRINIAIGAAKGLLYLHKNKMIHRDVRPNNILITHDHRPLIGDFGLARSQNENSIHSTEVVGTLGYLAPEYAEHGKVSSKTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLIDERIIKAHDVHQLFWMVRIAEKCLSREPQRRLNMIQVVDALTDIVEGRTCDSILTDYSPARSDSNYSASDSDESEDEMKESTKFEDESPTQSSESIDSNSISQMMHMNLRQPPSPPIQSISLSSSGSYNSHDESTSDGEAIEISKSNEGCSILRC 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00242 558 ProSitePatterns Tyrosine protein kinases specific active-site signature. 298 310 IPR008266 GO:0004672|GO:0006468
Viun1g00242 558 MobiDBLite consensus disorder prediction 62 76 - -
Viun1g00242 558 Gene3D Transferase(Phosphotransferase) domain 1 257 460 - -
Viun1g00242 558 MobiDBLite consensus disorder prediction 23 76 - -
Viun1g00242 558 Gene3D Phosphorylase Kinase; domain 1 141 256 - -
Viun1g00242 558 SUPERFAMILY Protein kinase-like (PK-like) 168 465 IPR011009 -
Viun1g00242 558 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 257 459 - -
Viun1g00242 558 MobiDBLite consensus disorder prediction 464 558 - -
Viun1g00242 558 MobiDBLite consensus disorder prediction 491 537 - -
Viun1g00242 558 SMART tyrkin_6 182 444 IPR020635 GO:0004713|GO:0006468
Viun1g00242 558 FunFam Proline-rich receptor-like protein kinase PERK8 144 256 - -
Viun1g00242 558 PANTHER OS01G0253100 PROTEIN 65 449 - -
Viun1g00242 558 ProSiteProfiles Protein kinase domain profile. 182 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00242 558 Pfam Protein tyrosine and serine/threonine kinase 187 443 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00242 Viun-Chr1 1516429 1519796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00242 167 444 Trihelix Transcription Factor Family AT1G70460 47.405 3.99e-79 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Viun1g00242 PK_Tyr_Ser-Thr 4.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00242 - - vun:114172612 1038.48