Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00240 ATGAGCTACCATGAAGCACACCAAAGGGCTGAAAAATCTGTTTGCTCTGTTTGCCATAACAGAAGACCACAGTTTGAAAGGAACAGAAAAAAAGAGTTCTCATATGCTGAGTTGTGTGCAGCCACACGAGGGTTTTCCCCTAAGAACTATCTATCAGAAGGGGGGTTTGGTTGTGTCTATAAAGGGGAGTTGCGTGGACAGAAGGTTGCTGTCAAGAAACACACGTATGCTAACCAAAAGGGAGAGAAGGAATTCAAGTCTGAAGTTGATGTCCTCAGCAAAGCAATGCATGAGAATGTGGTCATGCTGTTAGGATCATGCTCAGAACGGAACAATAGACTTCTTGTGTATGAATATGTCTGCAATGCTTCATTGGACCAACATTTATCTCAACATTCTCGTAAACCTCTTGATTGGACAGACAGGGTGAAAGTAGCTGATGGAGCTGCCAAAGGACTGCTATACCTGCATGAGAATAACATAATACACAGAGATTTGACAGCAAACAACATTCTTCTTACACATGATTATGACGCATTGCTAGGCGATTTTGGTTTGGCTAGAACTGTGATTGAAGACTCCTCATACTCCACAGAATGTTTTGGGAGTCGGGGTTATATGGCACCAGAATATGCAGAATTTGGTAAAGTGTCAATTAAAACAGATGTGTATTCCTTTGGGGTGGTTCTACTACAGCTAATAACAGGAATGAGACCTATGGATAAAAGACTCGGAGAAAGAAGTCTTATGGGATGGGCAAGGCCACTTTTAAAAGATAGGAAATATGCAGATTTAGTTGATGAAAGAATCACAAAATCTCATGATGCCCATCAACTATTTTGGATGATTCGATTAGCAGAGAAATGTCTAAGCAGAGAGCCCAAAAAGAGACTAAATATGATTCAGGTTGTTGATGCTTTGACTCACATAGTGGAAGGCAGAACACATGCCAGCATCTTAAGAGATTGCTTCCCTGCAAGGTCAGGTTCGATTTATAGTGCATCAGACTCTGATGAATCTGAAGAAGAAATGAAGGAATCCTTCAAGTTTGAAGATGAATTACTAATTCAGTTTAGTTCCTTTAAATGA 1089 0.404 MSYHEAHQRAEKSVCSVCHNRRPQFERNRKKEFSYAELCAATRGFSPKNYLSEGGFGCVYKGELRGQKVAVKKHTYANQKGEKEFKSEVDVLSKAMHENVVMLLGSCSERNNRLLVYEYVCNASLDQHLSQHSRKPLDWTDRVKVADGAAKGLLYLHENNIIHRDLTANNILLTHDYDALLGDFGLARTVIEDSSYSTECFGSRGYMAPEYAEFGKVSIKTDVYSFGVVLLQLITGMRPMDKRLGERSLMGWARPLLKDRKYADLVDERITKSHDAHQLFWMIRLAEKCLSREPKKRLNMIQVVDALTHIVEGRTHASILRDCFPARSGSIYSASDSDESEEEMKESFKFEDELLIQFSSFK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00240 362 PIRSF ILK 4 325 - -
Viun1g00240 362 PANTHER OS01G0750732 PROTEIN 10 332 - -
Viun1g00240 362 ProSiteProfiles Protein kinase domain profile. 45 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00240 362 Gene3D Transferase(Phosphotransferase) domain 1 121 322 - -
Viun1g00240 362 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 120 322 - -
Viun1g00240 362 Gene3D Phosphorylase Kinase; domain 1 15 119 - -
Viun1g00240 362 FunFam Proline-rich receptor-like protein kinase PERK8 5 119 - -
Viun1g00240 362 ProSitePatterns Tyrosine protein kinases specific active-site signature. 161 173 IPR008266 GO:0004672|GO:0006468
Viun1g00240 362 Pfam Protein tyrosine and serine/threonine kinase 49 307 IPR001245 GO:0004672|GO:0006468
Viun1g00240 362 SUPERFAMILY Protein kinase-like (PK-like) 31 315 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00240 Viun-Chr1 1504871 1508460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00240 28 312 Trihelix Transcription Factor Family AT5G38560 47.315 7.38e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Viun1g00240 PK_Tyr_Ser-Thr 2.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00240 - - gmx:100794450 498.434