Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00239 ATGAACAGAAAAAAAGAGTTCTCATATGCTGAGTTATGTGCAGCCACACAAGGGTTTTCCCCTAAGAACTATCTCTCAGAAGGAGGGTTTGGTTCTGTCTTCAAAGGGGAGTTGTGTGGAGAGAAGATTGCTGTGAAGCAACACACTTATGCTAACCAAAAGGGAGAGAAGGAATTCAAGTCTGAAGTTGATGTTCTCAGCAAAGCAATGCATGAGAATGTGGTCATGCTGTTAGGATCATGCGCAGAAGGGATTCATAGACTTCTTGTGTATGAATATGTCTGCAATGCTTCATTGGATCAACATTTATCTCAACATTCTCGTAAACTTCTTGATTGGCAAGATAGGGTGAAAGTAGCTGATGGAGCTGCCAAAGGACTGCTATACCTGCATGAGAATAACATCATACACAGAGATCTGACAACAAACAACATTCTTCTTACACATGATTATGAAGCATTGCTAGGCGATTTTGGTTTGGCTAGAACTGTGATTGAAGGCTCCTCATACTCTACAGAATGTGTTGGGAATCTGGCTTATATGGCACCAGAATATGCAGAATCAGGAAAAGTGTCAATAAAAACAGATGTATATTCCTTTGGGGTGGTTCTGCTACAGTTAATAACTGGAATGAGAACCACAGACAAACGACTTGGGGGTAAAGGTCTGGTGGAATGGGCTAGACCATTACTGAGGGAAGGAAAATGCCAAGACCTTATTGATGGAAGAATGATGAACTCCCATGATTGCCATCAACTCTATTGGATGAGCCGTCTAGCAGGAAATTGTCTTCAGAGGGATCCTCAAAAGAGATTGCATATGAACACAGTGGTGAAGGCTTTAAGTCAGATAGGCAAAGGTTGTAGCTGCATTGTGAGAAAAGATCATACCCTTCTAATCTCAGGCCCTTCTAGGTCAAAAGATGATTCAGAGGAATCCTCACAATCACAAGAGTGGAAGTGA 963 0.4174 MNRKKEFSYAELCAATQGFSPKNYLSEGGFGSVFKGELCGEKIAVKQHTYANQKGEKEFKSEVDVLSKAMHENVVMLLGSCAEGIHRLLVYEYVCNASLDQHLSQHSRKLLDWQDRVKVADGAAKGLLYLHENNIIHRDLTTNNILLTHDYEALLGDFGLARTVIEGSSYSTECVGNLAYMAPEYAESGKVSIKTDVYSFGVVLLQLITGMRTTDKRLGGKGLVEWARPLLREGKCQDLIDGRMMNSHDCHQLYWMSRLAGNCLQRDPQKRLHMNTVVKALSQIGKGCSCIVRKDHTLLISGPSRSKDDSEESSQSQEWK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00239 320 PANTHER OS01G0253100 PROTEIN 5 283 - -
Viun1g00239 320 FunFam Proline-rich receptor-like protein kinase PERK8 1 93 - -
Viun1g00239 320 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 94 296 - -
Viun1g00239 320 ProSitePatterns Tyrosine protein kinases specific active-site signature. 135 147 IPR008266 GO:0004672|GO:0006468
Viun1g00239 320 Pfam Protein tyrosine and serine/threonine kinase 23 281 IPR001245 GO:0004672|GO:0006468
Viun1g00239 320 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Viun1g00239 320 ProSiteProfiles Protein kinase domain profile. 19 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00239 320 Gene3D Transferase(Phosphotransferase) domain 1 95 296 - -
Viun1g00239 320 MobiDBLite consensus disorder prediction 301 320 - -
Viun1g00239 320 SUPERFAMILY Protein kinase-like (PK-like) 5 281 IPR011009 -
Viun1g00239 320 PIRSF ILK 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00239 Viun-Chr1 1479467 1482353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00239 2 284 Trihelix Transcription Factor Family AT5G38560 45.946 1.07e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Viun1g00239 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00239 - - vun:114183900 622.083