Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00235 ATGGGTCAAATGACACATGAGATTGATGACAATGTGCATGGTCAGGATCAGACTGGGTCACAGTTGAATGACGATGGTAATGGAGGAGGTGTTGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATAAGCATGGAGAGGGGAATTGGAATGCTGTTCAGAAGTATTCAGGCCTTTCTCGTTGTGGAAAAAGTTGCCGATTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGCGCATTTACTGCAGAAGAGGAGCAGATGATCGCTGAACTCCATGCCAAAATGGGAAACAAGTGGGCACGCATGGCAGCACATTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGAATGAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCGGAAGTAGTACTGCAAGCATTTCAAGATAAAAAGCATGGCCAAAGTACTGCTGAAATCAGCGAAGGAGATGGAGGCCACCAGGATTTCATGGAGAAAAACAATTATGAGATACATGATGCTATATATGACAGTCTGAAGGAAACTCAGGGAATCTTACCTTTTGTGCCTGAGCTTCCTGATATTTCTGCTAATAGCATTCTGACAAATGTTCTTGGTTCTCCTCCATACTGTAATTTCCTGCCATCCACATTACCTAACCATGATCATCTTCATGAGTCATCCGTGTCTCTTCTTGGTTCCAGTGAATTGAACACTAATGGGTTTTATCCATTTGACCACTTTAAGGATAATACTTCTGATAAGTTTGCAGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCAATTTGTTACAGCCATTCATTATCGAATGACAATTACTCTACTTCTAAGCTGGCTTCTGAGGCTATGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGGTAGCTGGGGTACCTCTCCCCCGCCTCCATTGAATGATTCTACTGACATTTTCATCCATTCTCCTCAACCACCTTATGCACTGGACTCAGGTTCTTCTTCATCACTCAGTCGTTGCTTCCTTAATGAATTTCTTTGTCAGCAGGCGAAGACTCTTGGTTATTCAAAGAATAATTGGCCTGAGAGTTCAAATTCGTCCGTTGCAACTCCCGTTGATAGAGCTGAGAGTTCAGCTTTGAATGTGTACGAGACAGAGTGGGAAGATTATGCTGACCCTGTATCTCCCTTTGGCGCAACTTCAATCCTGAATGAGCATCCTGTTGTTGGCACCAACGGAAAGCCATGGGATGGATGGGAACCTTTTCAGACCTTTAGTGAAAACTCTGCAGGCAACAATGAGAAGTTGCAGTCAGTTGATCAGGTTTTGGCCCCTAAGAATGAAAATCAATCCATGTCTCTATTGAATCTCACTTGGCCAGATGTCTTGCTGGCCTCAGATTGGCACGAGCTGTATTCTGAGCACAACGGCATGAACCAAGCTGACATGATTGATGCTAGTGATAATTTCACGAGACAGTAA 1548 0.4406 MGQMTHEIDDNVHGQDQTGSQLNDDGNGGGVVLKKGPWTAAEDVILVDYVNKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVVLQAFQDKKHGQSTAEISEGDGGHQDFMEKNNYEIHDAIYDSLKETQGILPFVPELPDISANSILTNVLGSPPYCNFLPSTLPNHDHLHESSVSLLGSSELNTNGFYPFDHFKDNTSDKFAESFGLHSPLDHGASSYGSICYSHSLSNDNYSTSKLASEAMKSELPSLQYPETEFGSWGTSPPPPLNDSTDIFIHSPQPPYALDSGSSSSLSRCFLNEFLCQQAKTLGYSKNNWPESSNSSVATPVDRAESSALNVYETEWEDYADPVSPFGATSILNEHPVVGTNGKPWDGWEPFQTFSENSAGNNEKLQSVDQVLAPKNENQSMSLLNLTWPDVLLASDWHELYSEHNGMNQADMIDASDNFTRQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00235 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Viun1g00235 515 FunFam Transcription factor GAMYB 90 136 - -
Viun1g00235 515 ProSiteProfiles Myb-like domain profile. 33 82 IPR001005 -
Viun1g00235 515 Gene3D - 34 87 - -
Viun1g00235 515 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 499 - -
Viun1g00235 515 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Viun1g00235 515 MobiDBLite consensus disorder prediction 1 33 - -
Viun1g00235 515 Gene3D - 90 136 - -
Viun1g00235 515 FunFam MYB-related transcription factor 34 87 - -
Viun1g00235 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Viun1g00235 515 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Viun1g00235 515 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Viun1g00235 515 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Viun1g00235 515 CDD SANT 37 82 IPR001005 -
Viun1g00235 515 SMART sant 87 135 IPR001005 -
Viun1g00235 515 SMART sant 34 84 IPR001005 -
Viun1g00235 515 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00235 Viun-Chr1 1460911 1465646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00235 30 490 MYB Transcription Factor Family AT5G06100 41.772 1.75e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g00235 Myb_DNA-binding 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00235 K09422 - gmx:100792349 830.091