Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00222 ATGTTAAAATCCTACGGGAAAGTTGATGAGCATGGGCAAATGGTGTTGGAGACAAAGAAGAAAACCAGAAAGAGAGTCACAATCATAGGATTGTCCTCAGTAGTTTTAGCAGCTGTTGTTTTTGCAGCTGTGTTTGGCATTGTTGGCACCAACTCTTCAGAAGGTGGCAATGATGCTCACACTGTGACAGATTCAGTGAAGGCTGTTTGTGATGTGACATTGTACAAGGATTCTTGCTACAGCAGCCTTGGTTCTGCTGTGAACTCGAACCAGGTTCAGCCTCAGGAGTTGTTCGTGCTGTCAAAGAAGGTGGCCTTATCTGAAGTGTCCAAAGCTTTTGAATATTTCAGTGATCATCATCATGGAGCTTTCAAAGGGGTGCTGGTGAAGAACAGCAGGACCAAGGAGGCTATGAAAAATTGCAGGGAGCTTTTGGGTCTTGCGGTTGATCATCTGAATAGCTCTTTGACATTGACATCAGGGGAAAACTTTTCTCTTGTTGAAGTTTTTGAGGATCTTCAAACATGGTTAAGTGCTGCAGGTACATATCTGAATACTTGTATTGAAGGCTTTGAAGATGAAAAAGAAGCAATTAAGACAAGTGTAGAAACCTATCTTAAAAATTCTACACAGTTCACCAGTAACAGTCTTGCCATCGTTACCTGGATCAACAAGGCTACAACCACACTGAACCTTAGGCGCTTACTGAGTTTATTACCTCATCACAATGAAGCACCAGCATGGCTTCCTTCAGAAGATAGGAGGCTCCTTCTCACAGAGGATTTGAGGAAGAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAAGAAAATTTCTGATGCACTTAAACATGTTCCTGATAAGAGCAACAAGAGGACTGTGATCTATGTGAAAAAAGGGGTTTACTATGAAAATGTGAGGGTTGAGAAGACCAAATGGAATGTGATGATCATTGGTGATGGAATGACATCTACTATTGTATCTGCAAACCTTAACTTTTTGGATGGCACACCAACTTTCTCAACAGCAACATTTGCTGTATTTGGAAGGAATTTCATGGCAAGAGATATGGGTTTTAGGAACAGTGCTGGTCCACAGAAGCATCAAGCAGTAGCACTAATGACAAGTGCTGATCAAGCAGTTTTCTATAGATGCCACATTGATGCATATCAGGATACTCTCTATGCTCATTCCAACCGTCAATTCTACAGAGAATGTAACATCTATGGCACAGTTGATTTCATCTTTGGTAATTCTGCAGTTGTGATCCAAAACTGTAATATTAGGCCAAAGTTACCAATGCATGGCCAGCAAAACACAATCACAGCTCAGGGAAAAACTGACCCTAACATGAACACTGGGATCTCCATTCAGAACTGCAACATTTCACCCTTTGGTAACTTGAGTTCTGTGGAGACATATCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTACATGAAATCCAGAATGGAAGGTTTTGTGAACCCCAAAGGCTGGTTACCATGGACAGGGAACTCAGCTCCAGACACCATTTTCTATGCAGAATTTCAGAATGTTGGACCAGGTTCTTCAACAAAGAATAGGGTGAAATGGAAGGGTTTGAGAACCATTACTAGTGAACAAGCCAGAAAGTTTACTATCAAGGGTTTTCTACAAGGAGATAAATGGATTTCTGCAGCAGGTGCTCCATTTGAGTCAGATCTATGA 1722 0.4158 MLKSYGKVDEHGQMVLETKKKTRKRVTIIGLSSVVLAAVVFAAVFGIVGTNSSEGGNDAHTVTDSVKAVCDVTLYKDSCYSSLGSAVNSNQVQPQELFVLSKKVALSEVSKAFEYFSDHHHGAFKGVLVKNSRTKEAMKNCRELLGLAVDHLNSSLTLTSGENFSLVEVFEDLQTWLSAAGTYLNTCIEGFEDEKEAIKTSVETYLKNSTQFTSNSLAIVTWINKATTTLNLRRLLSLLPHHNEAPAWLPSEDRRLLLTEDLRKKADIVVAKDGSGKYKKISDALKHVPDKSNKRTVIYVKKGVYYENVRVEKTKWNVMIIGDGMTSTIVSANLNFLDGTPTFSTATFAVFGRNFMARDMGFRNSAGPQKHQAVALMTSADQAVFYRCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQNTITAQGKTDPNMNTGISIQNCNISPFGNLSSVETYLGRPWKNYSTTVYMKSRMEGFVNPKGWLPWTGNSAPDTIFYAEFQNVGPGSSTKNRVKWKGLRTITSEQARKFTIKGFLQGDKWISAAGAPFESDL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00222 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 223 IPR035513 -
Viun1g00222 573 SUPERFAMILY Pectin lyase-like 265 570 IPR011050 -
Viun1g00222 573 FunFam Pectinesterase 62 224 - -
Viun1g00222 573 Pfam Plant invertase/pectin methylesterase inhibitor 65 219 IPR006501 GO:0004857
Viun1g00222 573 PANTHER PECTINESTERASE 36 563 - -
Viun1g00222 573 SMART PMEI_2 61 219 IPR006501 GO:0004857
Viun1g00222 573 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Viun1g00222 573 Gene3D - 262 573 IPR012334 -
Viun1g00222 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 224 IPR035513 -
Viun1g00222 573 Pfam Pectinesterase 267 559 IPR000070 GO:0030599|GO:0042545
Viun1g00222 573 CDD PMEI-like_3 68 225 - -
Viun1g00222 573 FunFam Pectinesterase 261 573 - -
Viun1g00222 573 NCBIfam pectinesterase inhibitor domain 35 223 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00222 Viun-Chr1 1380289 1382763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00222 1 573 Carbohydrate Esterase AT3G10710 56.055 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00222 - - gmx:100811152 952.199