Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00221 ATGCTCAAAACATATTCCGAGACAAAGCCACAAACTTCTCTGAAAGCCCCACATCGAACTTCAAGAAAGACAATGTCATCCCCACCATTTCTTCTTCTCTTTCTCTTCTTCCTCTCAGCCCCATTACTCTTAGCTCAATCTCCACCTTCTCCACCTTCTCCTTCCTCTTCTGTCGCCTGCAAAGCCACACTCTATCCAAAACTATGCCGTTCCATTCTCTCCGCCATTCGCGCCTCCCCTTCCGACCCTTATGGCTATGGCAAGTTCTCCATAAAGCAAAGCCTCAAACAGGCACGTAAACTCGCCAAGGTCTTTCAGGACTTCCTCCAACGCCACCAATCATCTTCTTCCCTCAACCATGCAGAAGTTGCGTCTCTCGGAGACTGCAGAGACCTCAACCAGCTCAACGTGGACTATTTATCGTCCATCTCTGAGGAGCTCAAATCAATGAGCTCCTCAGACGCCGAACTGGTTGAGAAAATCGAGAGCTATCTCAGTGCTGTGGCCACCAACCACTACACATGCTACGATGGGTTGGTGGTGACCAAAAGCAACATTGCCACTGCCCTTACCGTGCCACTCAAGGATGTGACCCAGTTGTACAGTGTCTCACTTGGGTTGGTCACTGAGGCTCTCGACAAGAACCTCAGAAGAAACAAGACACGCAAACATGGACTCCCCACCAAAACCTTCAAGGTTAGGCAACCACTGGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGTTGCACCAAGTTATCCAATTGCAGCAGAGCTGGAAGGAACCTCAAAGAAAGTGGGAGCCAAGGAATTTTGTTACAGGATTTTGTGATTGTGAGTTCTTATGGAATAGACAACTACACTTCCATTGGAGAGGCTATTGCTGCTGCACCCAATGACACAAAGCCTGAAGATGGATATTTCCTGGTGTATGTTAGGGAGGGAATCTATGAGGAATATGTGGTAATTCCCAGAGAAAAGAAGAATATATTGCTTGTTGGAGATGGTATTAACAAGACTATCATCACAGGGAATCATAGTGTCATAGATGGTTGGACAACTTTCAATTCTTCCACATTTGCTGTATCTGGAGAAAGGTTTATAGCGGTGGATGTTACATTCAGAAACACAGCTGGACCAGAAAAACACCAAGCAGTGGCAGTGCGGAACAATGCTGACCTCTCTACATTCTACCGATGCAGTTTTGAAGGATATCAAGACACTCTTTATGTTCACTCTCTGAGGCAATTCTACAGAGAATGTGAAATCTACGGCACTGTGGACTTCATTTTTGGCAACGCAGCCGTGGTATTCCAACACAGTAAGATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCTAATCAGAACACTGGCATTTCAATCCAAAACTGCACCATTGATGCTGCACCAGACTTGGCTGCAGACTTGAATTCCACAGCAAGTTACTTAGGCCGGCCATGGAAGTTGTATTCAAGAACTGTGTACCTGCAATCATACATTGGAAATGTTATTCAACCTTCAGGGTGGTTAGAGTGGAATGGCACAGTTGGGTTAGACACCCTCTTTTATGGTGAGTTTAACAACTATGGTCCTGGTTCTAACACCAGCAATAGAGTACAATGGCCTGGTTACTTTCTGTTGAATGCTACTCAGGCTTGGAACTTCACAGTCCTGAACTTTACCTTGGGAAATACTTGGCTTCCTGACACAGATATACCTTACACTGAAGGACTGCTGAGATAG 1776 0.4561 MLKTYSETKPQTSLKAPHRTSRKTMSSPPFLLLFLFFLSAPLLLAQSPPSPPSPSSSVACKATLYPKLCRSILSAIRASPSDPYGYGKFSIKQSLKQARKLAKVFQDFLQRHQSSSSLNHAEVASLGDCRDLNQLNVDYLSSISEELKSMSSSDAELVEKIESYLSAVATNHYTCYDGLVVTKSNIATALTVPLKDVTQLYSVSLGLVTEALDKNLRRNKTRKHGLPTKTFKVRQPLEKLIKLLRTKYSCTKLSNCSRAGRNLKESGSQGILLQDFVIVSSYGIDNYTSIGEAIAAAPNDTKPEDGYFLVYVREGIYEEYVVIPREKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECEIYGTVDFIFGNAAVVFQHSKIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAADLNSTASYLGRPWKLYSRTVYLQSYIGNVIQPSGWLEWNGTVGLDTLFYGEFNNYGPGSNTSNRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00221 591 PANTHER PECTINESTERASE 38 579 - -
Viun1g00221 591 CDD PMEI-like_3 59 210 - -
Viun1g00221 591 NCBIfam pectinesterase inhibitor domain 31 209 IPR006501 GO:0004857
Viun1g00221 591 Gene3D - 275 591 IPR012334 -
Viun1g00221 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 210 IPR035513 -
Viun1g00221 591 FunFam Pectinesterase 272 589 - -
Viun1g00221 591 SMART PMEI_2 51 207 IPR006501 GO:0004857
Viun1g00221 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 209 IPR035513 -
Viun1g00221 591 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Viun1g00221 591 Pfam Pectinesterase 277 574 IPR000070 GO:0030599|GO:0042545
Viun1g00221 591 SUPERFAMILY Pectin lyase-like 275 588 IPR011050 -
Viun1g00221 591 MobiDBLite consensus disorder prediction 1 23 - -
Viun1g00221 591 Pfam Plant invertase/pectin methylesterase inhibitor 59 206 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00221 Viun-Chr1 1376394 1380265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00221 59 590 Carbohydrate Esterase AT3G10720 61.967 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00221 K01051 - gmx:100816503 1016.14