Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00220 ATGGATATAGATCTCCGGTTACCTTCGGGTGAACATGATAAGGAGGATGAAGAAACAACTACAATTGATAACATGCTGGACAGTGAAGAAAAATTGCACAATGGAGGTATAGATGGCAGAAATATAGTTGATACTGGTATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCGATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAGACATCAAGAGAATTTATAGATGCGAAGTTTGCTTGCTCCAGATATGGAACAAAACGAGAGTATGACAAATCATTTAATCGACCACGTGCTCGACAGAACAAACAAGATTCTGAAAATTCAACAGGTCGAAGATCTTGCTCTAAAACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGATCAGATGGAAAGTGGGTTATACATAGCTTTGTGAAAGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTTAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGAAATTTGGGCCTGGAGTCAGGGGAGGCTAAACTCATGCTTGATTTTTTCATACAGATGCAAAATATGAATTCCAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTAGTGTCATTTGACACCACATATGTTAGAAACAAATATAAAATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCACTACCAATTTACACTACTTGGATGTGCCTTGATATCAGATGAAAGTGCTGCCACTTTTTCTTGGCTATTTCGGACATGGCTGAAAGGAGTTGGTGGTCAAGTTCCGAAAGTGATCATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGACATCTTTCCTAATTCTAGTCATTGTGTTTGCCTATGGCATGTATTAGGAAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAGCATGATAATTTTATGGCCAAATTTGAAAAATGCATTTATAGGTCCTTGACCAGTGATGATTTTGAGAAGAGATGGTGGAAAATTGTTGATAAGTGTGAACTTCGTGAGGATGAATGCATGCAGTCATTGTATGAAGATCGAAAGTTATGGGCACCAACATTCATGAAAGATGTTTTCTTAGGTGGTATGTCTACCGTCCAGCGATCCGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTCCAAGACTTTGTCAAACAGTATGAATCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACATGGAATAAATTGGCAACATTAAAAACTCCTTCACCTTTGGAGAAGAGTGTTGCAGGGACTTTCACTCATGCTGTATTCAAGAAAATTCAAGCTGAGGTTGTTGGTGCAGTTGCCTGTCATCCTAAAGCTGACAGGCAGGATGATACAACCACAGTTCACAGGGTTCATGACATGGAAACAAGTAAAGACTTTTTTGTTGTGGTGAATCAAGTGAAGTTCGAGTTGTCTTGTATATGTAGGTTATTTGAATACAGAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAATATTCTGGACATTCAGTGTTCCCGTCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGCTCAGGAATATAATTGGAGAAGAATCTGAACACATGCTGACTAGGGTGCAACGGTACAATGATTTATGTCAGCGAGCACTGAAGCTTAGTGAAGAGGGATCATTGTCCCAAGAGAGTTATAGTATTGCATTCCATGCTCTACATGAAGCACACAAAAGTTGTGTGAATGTTAACAATTCTAGTAAGAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCACTGAAGAAGATACACAAAGTAGAAATATAGGCAAACCAAACAAAAAGAAGAACCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCAGAAGTGATGACAGTTGGGGCCCTAGACAACTTGCAACAAATGGAAAAATTCAGCACAAGAGCTGCAGTAACCCTTGAAGGTTATTATGGTACACAACAGAGCGTGCAAGGAATGTTGAACTTAATGGGACCAACTCGTGATGATTACTATGGGAATCAACAGACTCTTCAGGGGCTGGGACCAATAAGTTCCATACCAACCAGTCACGATGGTTATTACGGTGCACATCAGGGCATTTCTGGTCTGGCACAACTAGATTTTTTGCGAACTGGTTTCACATATAGCATTCGGGATGATCCTAACGTGAGAGCAACACAGTTGCATGACGATCCATCAAGACATGCGTGA 2532 0.391 MDIDLRLPSGEHDKEDEETTTIDNMLDSEEKLHNGGIDGRNIVDTGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESAATFSWLFRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPNSSHCVCLWHVLGKVSENLAPVIKKHDNFMAKFEKCIYRSLTSDDFEKRWWKIVDKCELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYESILQDRYEEEAKADSDTWNKLATLKTPSPLEKSVAGTFTHAVFKKIQAEVVGAVACHPKADRQDDTTTVHRVHDMETSKDFFVVVNQVKFELSCICRLFEYRGYLCRHALIVLQYSGHSVFPSQYILKRWTKDAKLRNIIGEESEHMLTRVQRYNDLCQRALKLSEEGSLSQESYSIAFHALHEAHKSCVNVNNSSKSPTEAGTSGAHGQLSTEEDTQSRNIGKPNKKKNPTKKKKVNSEAEVMTVGALDNLQQMEKFSTRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGAHQGISGLAQLDFLRTGFTYSIRDDPNVRATQLHDDPSRHA 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00220 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 678 IPR031052 GO:0006355
Viun1g00220 843 MobiDBLite consensus disorder prediction 679 726 - -
Viun1g00220 843 MobiDBLite consensus disorder prediction 132 164 - -
Viun1g00220 843 MobiDBLite consensus disorder prediction 679 706 - -
Viun1g00220 843 Pfam MULE transposase domain 288 380 IPR018289 -
Viun1g00220 843 SMART 26again6 579 606 IPR006564 GO:0008270
Viun1g00220 843 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Viun1g00220 843 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Viun1g00220 843 Pfam SWIM zinc finger 576 602 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00220 Viun-Chr1 1345962 1350001 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun1g00220 FAR1 2.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00220 - - gmx:100817034 1632.85