Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00219 ATGGGACTTAGTACCCTTGAAAACACTGAGCCGAAAGCTTTTTTCGTCATGGATATAGATCTCCGGTTACCTTCGGGTGAACATGATAAGGAGGATGAAGAAACAACTACAATTGATAACATGCTGGACAGTGAAGAAAAATTGCACAATGGAGGTATAGATGGCAGAAATATAGTTGATACTGGTATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCGATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAGACATCAAGAGAATTTATAGATGCGAAGTTTGCTTGCTCCAGATATGGAACAAAACGAGAGTATGACAAATCATTTAATCGACCACGTGCTCGACAGAACAAACAAGATTCTGAAAATTCAACAGGTCGAAGATCTTGCTCTAAAACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGATCAGATGGAAAGTGGGTTATACATAGCTTTGTGAAAGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTTAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGAAATTTGGGCCTGGAGTCAGGGGAGGCTAAACTCATGCTTGATTTTTTCATACAGATGCAAAATATGAATTCCAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTAGTGTCATTTGACACCACATATGTTAGAAACAAATATAAAATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCACTACCAATTTACACTACTTGGATGTGCCTTGATATCAGATGAAAGTGCTGCCACTTTTTCTTGGCTATTTCGGACATGGCTGAAAGGAGTTGGTGGTCAAGTTCCGAAAGTGATCATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGACATCTTTCCTAATTCTAGTCATTGTGTTTGCCTATGGCATGTATTAGGAAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAGCATGATAATTTTATGGCCAAATTTGAAAAATGCATTTATAGGTCCTTGACCAGTGATGATTTTGAGAAGAGATGGTGGAAAATTGTTGATAAGTGTGAACTTCGTGAGGATGAATGCATGCAGTCATTGTATGAAGATCGAAAGTTATGGGCACCAACATTCATGAAAGATGTTTTCTTAGGTGGTATGTCTACCGTCCAGCGATCCGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTCCAAGACTTTGTCAAACAGTATGAATCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACATGGAATAAATTGGCAACATTAAAAACTCCTTCACCTTTGGAGAAGAGTGTTGCAGGGACTTTCACTCATGCTGTATTCAAGAAAATTCAAGCTGAGGTTGTTGGTGCAGTTGCCTGTCATCCTAAAGCTGACAGGCAGGATGATACAACCACAGTTCACAGGGTTCATGACATGGAAACAAGTAAAGACTTTTTTGTTGTGGTGAATCAAGTGAAGTTCGAGTTGTCTTGTATATGTAGGTTATTTGAATACAGAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAATATTCTGGACATTCAGTGTTCCCGTCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGCTCAGGAATATAATTGGAGAAGAATCTGAACACATGCTGACTAGGGTGCAACGGTACAATGATTTATGTCAGCGAGCACTGAAGCTTAGTGAAGAGGGATCATTGTCCCAAGAGAGTTATAGTATTGCATTCCATGCTCTACATGAAGCACACAAAAGTTGTGTGAATGTTAACAATTCTAGTAAGAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCACTGAAGAAGATACACAAAGTAGAAATATAGGCAAACCAAACAAAAAGAAGAACCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCAGAAGTGATGACAGTTGGGGCCCTAGACAACTTGCAACAAATGGAAAAATTCAGCACAAGAGCTGCAGTAACCCTTGAAGGTTATTATGGTACACAACAGAGCGTGCAAGGAATGTTGAACTTAATGGGACCAACTCGTGATGATTACTATGGGAATCAACAGACTCTTCAGGGGCTGGGACCAATAAGTTCCATACCAACCAGTCACGATGGTTATTACGGTGCACATCAGGGCATTTCTGGTCTGGCACAACTAGATTTTTTGCGAACTGGTTTCACATATAGCATTCGGGATGATCCTAACGTGAGAGCAACACAGTTGCATGACGATCCATCAAGACATGCGTGA 2580 0.3919 MGLSTLENTEPKAFFVMDIDLRLPSGEHDKEDEETTTIDNMLDSEEKLHNGGIDGRNIVDTGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESAATFSWLFRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPNSSHCVCLWHVLGKVSENLAPVIKKHDNFMAKFEKCIYRSLTSDDFEKRWWKIVDKCELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYESILQDRYEEEAKADSDTWNKLATLKTPSPLEKSVAGTFTHAVFKKIQAEVVGAVACHPKADRQDDTTTVHRVHDMETSKDFFVVVNQVKFELSCICRLFEYRGYLCRHALIVLQYSGHSVFPSQYILKRWTKDAKLRNIIGEESEHMLTRVQRYNDLCQRALKLSEEGSLSQESYSIAFHALHEAHKSCVNVNNSSKSPTEAGTSGAHGQLSTEEDTQSRNIGKPNKKKNPTKKKKVNSEAEVMTVGALDNLQQMEKFSTRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGAHQGISGLAQLDFLRTGFTYSIRDDPNVRATQLHDDPSRHA 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00219 859 SMART 26again6 595 622 IPR006564 GO:0008270
Viun1g00219 859 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 85 694 IPR031052 GO:0006355
Viun1g00219 859 MobiDBLite consensus disorder prediction 695 742 - -
Viun1g00219 859 MobiDBLite consensus disorder prediction 148 180 - -
Viun1g00219 859 MobiDBLite consensus disorder prediction 695 722 - -
Viun1g00219 859 Pfam MULE transposase domain 304 396 IPR018289 -
Viun1g00219 859 ProSiteProfiles Zinc finger SWIM-type profile. 584 620 IPR007527 GO:0008270
Viun1g00219 859 Pfam FAR1 DNA-binding domain 105 207 IPR004330 -
Viun1g00219 859 Pfam SWIM zinc finger 592 618 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00219 Viun-Chr1 1345962 1353288 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun1g00219 FAR1 2.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00219 - - gmx:100817034 1632.85