Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00211 ATGGGTTCTAAGAGACCACATGTGATCATGACACCATCGACAACAGCTCCTGATAACAACTACCAACAAGACCCTTATTCCTCTGCTAATATTTCTGAACTTCCAACATCAAATTCAGGTTTTGGCAACGTCTTCAACCCGTTTGAGAACACTCTTGTTAACTCATCATCACGCAGAAGTTCCATGTCCAATCGCTCTTCTGGGAGCAAGAGCAACAACTCCATCCATGAAGTGAGTTTGAGCAGTTCGGCATCCAAATCCATACCCATTAGATACGGCTCAAAGGGTGCAGATTCTGAAGGACTAAGCGTGTCTCAGAGGGAACTCAGAGATGAGGATGCGAGGTTAGTATACATAAACGACCCTTTGAAAACGAACGAGACCTTTTTGTTTGCTGGGAACTCTATCCGCACGAGCAAATACTCCATCCTCAGTTTCATTCCCAGGAACCTTTTTGAACAGTTCCACAGAATCGCTTACATTTACTTTCTCATAATTGCCATTCTCAATCAGCTTCCTCAGCTTGCGGTTTTTGGAAGAGCTGTTTCGATCTTGCCACTGTCCTTTGTGCTGTTTGTCACAGCTGTGAAGGATGCGTATGAGGATTGGAGAAGGCACAGGAGTGATAAAGTTGAGAACAATAGGTTGGCATCGATTTTGGTTGATGGAAACTTTGTGGAGAAGAGGTGGAGGGATGTTAGAGTTGGTGAGGTGATAAAGATCAAGGCAAATGAACCCATTCCCTGTGATATTGTGTTGCTATCAACGAGTGATCCAACTGGGGTTGCATACGTGCAGACTATTAATCTAGATGGGGAGTCAAATTTGAAGACAAGGTATGCAAAGCAAGAGACTCATGGGAAGGAGGGGTTTGGTGGGGTGATCAAGTGTGAGAAACCCAATAGGAACATATATGGATTTCTGGCTAACATGGAAGTTGATGGAAAAAAGTTGTCACTTGGATCCTCCAACATTGTGCTTCGTGGATGTGAGCTCAAGAATACTAGTTGGGCCATTGGTGTTGCTGCATATTGTGGGAGTGAGACCAAGGCTATGCTGAATAGCTCAGGAGCTCCTTCTAAGAGGAGCAGATTGGAGACACGCATGAATTATGAGATCATTTGGCTCTCTTTCTTCCTCGTGGCATTGTGCACAATCACCTCAGTTTGTGCTGCTGTGTGGTTGAAGCGCCACAAGGATGAGTTGAATCTGTTGCCATATTATAGGAAACTAGACTTTTCAGAGGAGGAAGTGGAAAGCTACGAGTACTATGGATGGGGGTTTGAAGTTCTCTTCACATTCCTCATGTCAGTTATAGTGTTCCAGGTCATGATTCCCATTTCCTTGTACATTTCCATGGAGCTTGTCAGGGTTGGTCAGGCCTTCTTCATGATCCGAGACAACAAAATGTATGATGAGGAAACAAAGTCAAGGTTTCAGTGCAGGGCTTTGAACATTAATGAAGATTTGGGGCAGATTAAGTATGTTTTCTCGGATAAAACTGGCACTCTGACTCAGAACAAGATGGAGTTTCAATGTGCAAGCATCTGGGGGGTTGATTACAGTTCTACAGAGAACAGCATGGAGGGTGATCAAGTCGAACATTCTATTGAAGTGGATGGAAAGGTCTTCAGACCAAAGATGAAGGTGAAAGTTAATCCAGAGCTTTTGCAGCTAGCAAGAAGTGGATTTCTCAATTTGGAGGGAAAAAGGATTCATGATTTCTTTCTAGCACTGGCAACCTGCAACACTATTGTGCCTCTTGTTGTTGACTCGCCTGACCCTGATGTAAAACTGATAGATTACCAAGGAGAATCACCAGATGAACAAGCATTAGCTTATGCTGCCGCAGCCTATGGTTTTATGCTAGTAGAACGAACCTCCGGCCATGTAGTCATCGATATTCATGGACAAAGACAGAAGTTCAATGTCTTGGGTATGCATGAGTTTGACAGTGACAGGAAGAGGATGTCAGTTATATTGGGGTTCCCTGACAGTTCTGTGAAAGTGTTTGTCAAAGGAGCAGACACATCTATGCTTAATGTGATAGACAAGTCATTTAACATGGACTTAGTAAGAGCCACGGAAGCACATCTTCACTCTTACTCTTCCATTGGTTTGAGGACACTTGTTATTGGGATGAGAGACTTGAATGCTTCAGAATTTGAGCAATGGCATGCATCCTTCGAGGCTGCAAGCACTGCTGTTTTTGGCAGGGCTGCTATGCTCCGCAAGGTTTCTAGCATTGTAGAGAACAGTCTCAGCATATTAGGAGCATCTGCCATTGAAGATAAACTGCAACAAGGTGTGCCTGAATCCATTGAGTCTCTAAGGATTGCAGGGATCAAAGTGTGGGTTCTGACTGGGGACAAACAAGAAACTGCCATATCCATTGGCTACTCCTCAAAGCTCCTTACAAGCAAAATGAATCAGATTATAATCAACAGCAACAACAGAGCAGCATGCAGAAAAAGTTTGCAAGATGCCCTTGTCATGTCTAAAAAGCTCGTGTCCACATCTACCGTTGCCAACAATGTTGGAGGAACTTCAGAGGCAAATCCAATGGCCTTGGTAATTGATGGTACCAGTCTTGTGCATATTCTTGACAGTGAACTTGAAGAAGAGCTATTTCAACTTGCAAGTAGATGTTCTGTTGTTCTATGTTGCCGAGTTGCTCCACTGCAAAAGGCTGGCATTGTTGCCCTTGTGAAGAATAGGACATCAGACATGACTCTAGCCATTGGAGACGGTGCTAATGATGTCTCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGACAAGAGGGTCGGCAAGCTGTAATGGCATCTGATTTTGCAATGGGGCAGTTTAGGTTTTTGGTTCCTCTCTTACTGATACATGGACACTGGAATTACCAACGGCTTGGTTACATGATACTATACAATTTTTACAGAAATGCTGTCCTTGTTCTAGTCTTGTTTTGGTATGTGCTCTACACTGCTTTCACTTTGACAACTGCTATAAATGAATGGAGCACAACGTTATACTCAATAATCTACAGCTCATTGCCAACTATAGTTGTTGCTATTCTAGACAAGGATCTTGGTAAAAGGACTCTCCTAAAGTACCCTCAACTTTATGGGGCAGGTCAGAGACATGAGGCCTACAACAAGAAACTGTTTGCATTGACAATGTTAGATACTTTGTGGCAAAGCATGGTCATTTTCTGGGCACCCCTCTTTGCATATTGGAGTAGCACAGTTGATGTGTCAAGCATTGGAGACCTTTGGACTTTTGGGGTTGTTATTTTGGTGAATTTGCACTTGGCCATGGACGTTGTAAGGTGGTATTGGGTGACTCATGTTGCCATTTGGGGTTCTATTGTTGCAACTTTCATCTGTGTCATGATCATTGATGCTTTACCCAATCTTCCTGGCTACTGGGCTTTCTTTAATGTTGCAGGAACTGGATTGTTCTGGTTATTGTTGCTTGGGATCATAATAGCAGCATTGCTTCCACGTTTGGTTGTAAAATATGTTTATGAATATTATTTTCCGAATGATATTCAGATTTGTAGAGAAGCTGAGAAGATTGAGTATGAGAGAGTTGTTGAAAGGGCAGCAATAGAGATGCTTCCCATCTCAAACATTCCACCAAGATAA 3648 0.4309 MGSKRPHVIMTPSTTAPDNNYQQDPYSSANISELPTSNSGFGNVFNPFENTLVNSSSRRSSMSNRSSGSKSNNSIHEVSLSSSASKSIPIRYGSKGADSEGLSVSQRELRDEDARLVYINDPLKTNETFLFAGNSIRTSKYSILSFIPRNLFEQFHRIAYIYFLIIAILNQLPQLAVFGRAVSILPLSFVLFVTAVKDAYEDWRRHRSDKVENNRLASILVDGNFVEKRWRDVRVGEVIKIKANEPIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETHGKEGFGGVIKCEKPNRNIYGFLANMEVDGKKLSLGSSNIVLRGCELKNTSWAIGVAAYCGSETKAMLNSSGAPSKRSRLETRMNYEIIWLSFFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSEEEVESYEYYGWGFEVLFTFLMSVIVFQVMIPISLYISMELVRVGQAFFMIRDNKMYDEETKSRFQCRALNINEDLGQIKYVFSDKTGTLTQNKMEFQCASIWGVDYSSTENSMEGDQVEHSIEVDGKVFRPKMKVKVNPELLQLARSGFLNLEGKRIHDFFLALATCNTIVPLVVDSPDPDVKLIDYQGESPDEQALAYAAAAYGFMLVERTSGHVVIDIHGQRQKFNVLGMHEFDSDRKRMSVILGFPDSSVKVFVKGADTSMLNVIDKSFNMDLVRATEAHLHSYSSIGLRTLVIGMRDLNASEFEQWHASFEAASTAVFGRAAMLRKVSSIVENSLSILGASAIEDKLQQGVPESIESLRIAGIKVWVLTGDKQETAISIGYSSKLLTSKMNQIIINSNNRAACRKSLQDALVMSKKLVSTSTVANNVGGTSEANPMALVIDGTSLVHILDSELEEELFQLASRCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLYTAFTLTTAINEWSTTLYSIIYSSLPTIVVAILDKDLGKRTLLKYPQLYGAGQRHEAYNKKLFALTMLDTLWQSMVIFWAPLFAYWSSTVDVSSIGDLWTFGVVILVNLHLAMDVVRWYWVTHVAIWGSIVATFICVMIIDALPNLPGYWAFFNVAGTGLFWLLLLGIIIAALLPRLVVKYVYEYYFPNDIQICREAEKIEYERVVERAAIEMLPISNIPPR 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00211 1215 SUPERFAMILY HAD-like 492 969 IPR036412 -
Viun1g00211 1215 CDD P-type_ATPase_APLT_Dnf-like 133 1074 - -
Viun1g00211 1215 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 503 767 IPR023299 GO:0000166
Viun1g00211 1215 Gene3D - 187 354 - -
Viun1g00211 1215 PRINTS Sodium/potassium-transporting ATPase signature 991 1011 - -
Viun1g00211 1215 PRINTS Sodium/potassium-transporting ATPase signature 490 511 - -
Viun1g00211 1215 MobiDBLite consensus disorder prediction 8 33 - -
Viun1g00211 1215 Gene3D - 476 493 - -
Viun1g00211 1215 Gene3D - 507 518 IPR023299 GO:0000166
Viun1g00211 1215 Pfam E1-E2 ATPase 217 454 - -
Viun1g00211 1215 SUPERFAMILY Calcium ATPase, transmembrane domain M 131 1181 IPR023298 -
Viun1g00211 1215 Gene3D - 753 954 IPR023214 -
Viun1g00211 1215 FunFam Phospholipid-transporting ATPase 753 954 - -
Viun1g00211 1215 MobiDBLite consensus disorder prediction 1 33 - -
Viun1g00211 1215 SUPERFAMILY Calcium ATPase, transduction domain A 214 351 IPR008250 -
Viun1g00211 1215 Pfam Phospholipid-translocating ATPase N-terminal 117 183 IPR032631 -
Viun1g00211 1215 Gene3D - 494 506 IPR023214 -
Viun1g00211 1215 Pfam Cation transport ATPase (P-type) 592 680 - -
Viun1g00211 1215 SFLD p-type atpase 481 965 IPR044492 -
Viun1g00211 1215 FunFam Phospholipid-transporting ATPase 189 354 - -
Viun1g00211 1215 MobiDBLite consensus disorder prediction 54 80 - -
Viun1g00211 1215 Pfam Phospholipid-translocating P-type ATPase C-terminal 942 1182 IPR032630 -
Viun1g00211 1215 SFLD Haloacid Dehalogenase 481 965 - -
Viun1g00211 1215 NCBIfam phospholipid-translocating P-type ATPase 131 1189 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Viun1g00211 1215 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 106 1194 - -
Viun1g00211 1215 ProSitePatterns E1-E2 ATPases phosphorylation site. 499 505 IPR018303 -
Viun1g00211 1215 Gene3D - 602 733 IPR023299 GO:0000166
Viun1g00211 1215 NCBIfam HAD-IC family P-type ATPase 429 523 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun1g00211 1215 NCBIfam HAD-IC family P-type ATPase 885 1000 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun1g00211 1215 FunFam Phospholipid-transporting ATPase 601 734 - -
Viun1g00211 1215 PRINTS P-type cation-transporting ATPase superfamily signature 914 933 - -
Viun1g00211 1215 PRINTS P-type cation-transporting ATPase superfamily signature 497 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00211 Viun-Chr1 1287303 1292072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00211 62 1215 Primary Pumps ATPases AT5G04930 67.299 0.0 1663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00211 K14802 - gmx:100813982 2042.7