Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00209 ATGCACCACCAATTCACACAAAAAATGGGAACTCATCCATTCATGCTTGCTATCACCATTTTCAAGCTACTATTAGTCTTCTTCTCTCAATCTTCCGCGGCATCAGACACCATCACTCAATCTCAGCCACTTCATGATGATGGCAGCACCTTAGTTTCCAAAGATGGAACCTTTGAGTTAGGGTTCTTCAGTCCCGGTAGTTCCACAAACCGCTACATAGGAATATGGTACAAAATCATCCCAGTCAAAACCATTGTCTGGGTTGCCAACCGTGACAATCCAATCAAAAGCAGCAACAACAGCAACAGCAACAACATGTTAACCATCACCAATGAAGGAAACATGGTACTTCTCGACAACAACAATGAAACTGTCTGGTCAACAAACATGACATCACTCACAACTCAACCTCTGTTGAGTCCCATAGTGCAGCTCTTAGACACTGCAAACTTGGTAGTTAAAGAAGGGAACAACAACAAAAACAGTAACAGCAACAGCAACAACAACAACGAGAAAGAAGGAAACTTTTTGTGGCAAAGCTTTGACTACCCTTGTGATACTCTCTTGCCAGGAATGAAGCTTGGATGGGACCTTAAAAAGGGTATTGAAAGGAAGTTAAGGGCATGGAAGAGTTGGGATGATCCATCTTCAGGGAACCTAACTTGGGGTATGCTCCTTAGTAGTTACCCTGAATTGGTTCTGAAGAAAGGTTCGGTTGAGTATCATAGGAGTGGACCTTGGAATGGAGCAGGGTTCAGTGGCCAACCAGTGTTGAGAATCACTCCAATTGTTGACACCAAATTCGTGAATGATTCAGATGAGGTTTACTACTCATACTCTCTCAGGAACAAGTCTGTGATCTCAATAACTTACTTGAACCAAACCCTTCTTCATCGCCAACGCATTACATGGATTCCTGAGAACAAAACCTGGAGGGTTTATGAGTCTGTTCCCAGAGATGATTGTGATCCTTATAACACATGTGGTCCAAATGGAAATTGCATGGTTAATGAGACACCGATTTGCCAGTGTTTGGAAGGGTTTCGACCAAAATCTCACCAGAATTGGAACACTTTCGACTGGTCACAAGGATGTGTTCGTAGTGAACCTTGGAGTTGTCGGGTGAAAAACCAAGATGGTTTTCGGAGATTTGCTTCGATGAAGGTTCCTGATACGAGAAGTTCTTGGACTTATGGAAACATGTCTCTTGAAGATTGTAGAATTCAATGCTTGAAAAACTGTTCTTGCATGGCTTATTCAAACTTGGACATAAGGGAAGGTGGAAGTGGTTGTGCCATTTGGTTTGGTGATCTTGTTGATTTGAAATTGGTTCAAGCAAGCCAACAAGACATATACATTCGAATGGCTGTTTCAGGTTCAGATGAAGATACAAGAAAAAGGGTTTTAGTAATTACGATTCCAATTGTGTCGTCGGTCACTGTTTTGCTACTTGTTGTCTTCGTATGCATTTACCTGAGAAAAAGAAAGCAAAAAGGAAATGAACACGGCACACAAAATATTGTATCAACCGAAGACGATGAAGAAAACCAAGATTTTGAGCTTCCTTTGTTCGACCTCGCTTTGATATTCAATGCCACCAATGGCTTCTCGGAAGACAACAAACTTGGAGAAGGTGGTTTTGGACCGGTATATAAGGGTACACTCCGGGATGGAAGAGATATTGCCATCAAAAGACTCTCAAGGGGTTCATCTCAAGGGATCAAAGAATTCAAGAATGAAGTTATATTGTGTGCAAAACTTCAACATCGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTCAAGAAGAAGAGAAAATGTTAATATATGAATATATGCCCAACAGAAGCTTAGATTCATTTCTTTTCGATTCAACTCAAAGTAAACTTTTAGATTGGTCGAAACGCTTCAACATCATATGTGCAATTGCTCGTGGACTTCTTTATCTACATCAAGATTCTAGACTAAGGATCATACATAGAGATCTGAAAGCAAGTAATATTTTGCTAGATTATGACCCAAAAATTTCAGATTTTGGCTTAGCACGACTTTGTGGAGATGATCAAATTGAAGGGAATACAAAAAGAGTGGTTGGAACATATGGTTATATGGCACCAGAATATGCGATTGATGGTTTATTCTCCATAAAATCCGATGTATTCAGTTTTGGTATACTATTGTTAGAGATTGTGAGTGGAAAGAAAAACAAAGGAGTTACATATACAAGTGACACTTATAATCTCATTGGACATGCTTGGAAATTGTGGAAAGAGAATGATCCAACAAAATTGGTTGATACTTCTTTAGAAGAGTCGTACGTTGTATCAGAAGTGTTGCGTTGCATTCAAGTTGGTCTTTTATGTCTACAACATCATCCCAATGATAGACCAAACATGGCATCTGTGGTTGTTATGTTGACCAATGAAACTATTTTAGCTGAACCAAAGGAACCTGGTTTCTTGATAGAAAGAGTGATCCCTAGTGAAGTAGAATCTTCTAGTGAAAAATTAATATCTTTTTCAGTGAATGAATTGTCTATTTCACTAGTGGATGCTAGATAA 2559 0.3943 MHHQFTQKMGTHPFMLAITIFKLLLVFFSQSSAASDTITQSQPLHDDGSTLVSKDGTFELGFFSPGSSTNRYIGIWYKIIPVKTIVWVANRDNPIKSSNNSNSNNMLTITNEGNMVLLDNNNETVWSTNMTSLTTQPLLSPIVQLLDTANLVVKEGNNNKNSNSNSNNNNEKEGNFLWQSFDYPCDTLLPGMKLGWDLKKGIERKLRAWKSWDDPSSGNLTWGMLLSSYPELVLKKGSVEYHRSGPWNGAGFSGQPVLRITPIVDTKFVNDSDEVYYSYSLRNKSVISITYLNQTLLHRQRITWIPENKTWRVYESVPRDDCDPYNTCGPNGNCMVNETPICQCLEGFRPKSHQNWNTFDWSQGCVRSEPWSCRVKNQDGFRRFASMKVPDTRSSWTYGNMSLEDCRIQCLKNCSCMAYSNLDIREGGSGCAIWFGDLVDLKLVQASQQDIYIRMAVSGSDEDTRKRVLVITIPIVSSVTVLLLVVFVCIYLRKRKQKGNEHGTQNIVSTEDDEENQDFELPLFDLALIFNATNGFSEDNKLGEGGFGPVYKGTLRDGRDIAIKRLSRGSSQGIKEFKNEVILCAKLQHRNLVKVLGCCIQEEEKMLIYEYMPNRSLDSFLFDSTQSKLLDWSKRFNIICAIARGLLYLHQDSRLRIIHRDLKASNILLDYDPKISDFGLARLCGDDQIEGNTKRVVGTYGYMAPEYAIDGLFSIKSDVFSFGILLLEIVSGKKNKGVTYTSDTYNLIGHAWKLWKENDPTKLVDTSLEESYVVSEVLRCIQVGLLCLQHHPNDRPNMASVVVMLTNETILAEPKEPGFLIERVIPSEVESSSEKLISFSVNELSISLVDAR 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00209 852 Gene3D Transferase(Phosphotransferase) domain 1 612 815 - -
Viun1g00209 852 Gene3D Phosphorylase Kinase; domain 1 496 611 - -
Viun1g00209 852 SUPERFAMILY Protein kinase-like (PK-like) 517 823 IPR011009 -
Viun1g00209 852 Pfam Domain of unknown function (DUF3403) 806 852 IPR021820 GO:0004674
Viun1g00209 852 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 796 - -
Viun1g00209 852 CDD B_lectin 47 184 IPR001480 -
Viun1g00209 852 Gene3D Hepatocyte Growth Factor 372 455 - -
Viun1g00209 852 ProSiteProfiles EGF-like domain profile. 318 354 IPR000742 -
Viun1g00209 852 Gene3D - 29 181 IPR036426 -
Viun1g00209 852 ProSiteProfiles Protein kinase domain profile. 536 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00209 852 Pfam S-locus glycoprotein domain 243 352 IPR000858 GO:0048544
Viun1g00209 852 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 215 IPR036426 -
Viun1g00209 852 CDD PAN_AP_plant 372 456 - -
Viun1g00209 852 Pfam Protein tyrosine and serine/threonine kinase 539 803 IPR001245 GO:0004672|GO:0006468
Viun1g00209 852 SMART ntp_6 376 455 IPR003609 -
Viun1g00209 852 PIRSF SRK 7 852 IPR024171 GO:0004674
Viun1g00209 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 612 813 - -
Viun1g00209 852 Pfam PAN-like domain 373 441 IPR003609 -
Viun1g00209 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Viun1g00209 852 ProSiteProfiles Bulb-type lectin domain profile. 35 166 IPR001480 -
Viun1g00209 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 500 611 - -
Viun1g00209 852 SMART serkin_6 536 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00209 852 Pfam D-mannose binding lectin 84 210 IPR001480 -
Viun1g00209 852 ProSiteProfiles PAN/Apple domain profile. 373 456 IPR003609 -
Viun1g00209 852 CDD STKc_IRAK 542 807 - -
Viun1g00209 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 30 181 - -
Viun1g00209 852 SMART blect_4 41 184 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00209 Viun-Chr1 1269532 1273191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00209 468 820 Receptor kinase-like Gene Family AT4G23190 51.811 1.50e-123 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g00209 PK_Tyr_Ser-Thr 8.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00209 - - gmx:100776310 1077.39