Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00207 ATGAAAAACCCTAGTCACCTTCTTCCCATTCGTTCGCATATTAGTATCGTTCCTTCACTCTGCCGCTGCAAAAGCACTACTCTCTGCGCGGGATTCCACACCATTCCGTCAACAATGGCCTCCGAGAAGAAACTCTCCAATCCGATGCGAGAAATCAAAGTGCAGAAACTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACTCGCGCTGCCAAGGTGCTCGAACAACTCAGTGGCCAAACCCCTGTTTTCTCCAAAGCAAGGTACACTGTGCGTTCCTTTGGGATTAGAAGAAACGAGAAGATCGCGTGCTATGTGACGGTGCGGGGTGACAAGGCGATGCAGCTTTTGGAAAGTGGTTTGAAGGTGAAGGAGTACGAGCTTCTGAGGAGGAACTTCAGCGACACTGGCTGCTTTGGCTTCGGCATTCAGGAGCACATTGATTTGGGAATCAAGTATGATCCTTCTACTGGTATTTACGGAATGGATTTCTTTGTTGTTTTGGAGCGTCCTGGCTATCGCGTTGGACGACGCCGTCGATGCAAGTCTCGTGTTGGAATCCAGCACCGTGTGACAAAGGACGATGCCATGAAGTGGTTCCAAGTTAAATATGAAGGTGTCATCCTAAACAAGTCCCAGAATATTTAG 657 0.4962 MKNPSHLLPIRSHISIVPSLCRCKSTTLCAGFHTIPSTMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00207 218 Gene3D - 39 215 IPR022803 -
Viun1g00207 218 SUPERFAMILY RL5-like 46 211 IPR022803 -
Viun1g00207 218 ProSitePatterns Ribosomal protein L5 signature. 77 93 IPR020929 GO:0003735|GO:0005840|GO:0006412
Viun1g00207 218 Pfam Ribosomal protein L5 47 100 IPR031310 -
Viun1g00207 218 FunFam 60S ribosomal protein L11 39 212 - -
Viun1g00207 218 Pfam ribosomal L5P family C-terminus 104 202 IPR031309 -
Viun1g00207 218 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 37 214 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00207 Viun-Chr1 1262896 1264879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00207 39 218 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 96.667 2.09e-130 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00207 K02868 - cit:102625025 340.502