Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00170 ATGAAAATATCAGTAAGCACTCCAAGATTTTGCACAGTTTATGCTATTTCGAAGGGAAAATTGTCCATACGACAGTCAGACATGCCGATTGATGGCAGCATTATAGATGATGCTAGTGAAACCAGTTTGTCTTCCGGCAGCTCATCTAACTACACTTCCACCTCTCAGACAGAATCTGCCTCAGTTTCATCATATGCTGGTTTACACTCGTCTTCCCTAGCAACCCAACGATTTCAAGCTCTTTCAAGTATAAATAGTGCCCTCCTAAGCACAAATCCGAGTTTAAGTGACACCAGCCATTCTAGAGGCCAATCTCTAGATCTTGGGAGAGAAAATACTGCAACCAGCTCTGCTAGAAACTCAGACATTGATCATGCCTTAAGTCGAGTCTCTAGTTGCAAAAGCTTTATTTCGGATACTGAATCTTGGATGTATGATCAAAATTCTATAAAGGATGTGCCACTAGCAACTACACTTCCATCACCTAATAGGCAGGCAAAATTGAACCTTGAGCTGGAAAAGTTGAGAATTGAGCTAAGACATGTCCAAGGACTTCATGCGGTAGCTCAAAGTGAGAAAATTGAAGCATCGCGGAAGCTGAATGACCTTAGCAAGAGACGGTCAGAAGAAACCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGAAGGCAAAGGAATTAGCAAAACTAGAAATAGAGAAATATCAGGATGCATCTAGAGAAGCTGTATATTTGAAAGAATGTGCTGAAAGGGAGGCTGTGGAAAGGAAAGAAACAGAGTTGAAAGTCATCCGTGCTACAAAAGAGAAAGAAAAGTTGGAGGATGCTCTTAGTGGTAATATACTGCAGTACCGGAAGTTTACATGGGCTGAAATAGTCTCAGCTACTTCATCTTTTTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAACAGTGTACAAGTGCAATTTGTATCACACAACTGTTGCCGTTAAAGTTCTCAACACTAATGGAAATAAAAATCGTGAAAGCAAGCAATTCCAACAAGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTGGGTGCATGTCCTGATCGTGGATGTCTTGTATATGAATATATGGAGAATGGTAACCTGGAGGACAGACTGCTGAGGAAAAACAACACTCCCCCAATCACATGGTATGAGAGATTTCGAATAGCTTGGGAAATTGCATCAGCTCTTGCCTTTCTTCATAGCTCAAAGCCAGAACCTATCATTCATCGTGACTTAAAACCAGCAAACATCTTGCTTGGACGTAACCTTGTCAGCAAGATTGGTGACATTGGACTCAGTACAGTACTCCATTCCGATAATTTCTCTACCATGTACAAGGACACAGCACCTGTTGGAACACTCTGCTACATTGATCCTGAGTATCAAAGGACTGGTTTAATATCTCCAAAATCTGATGTCTATGCTTTTGGAATGGTGATCCTACAGCTATTGACAGCAAAACCAGCAATAGCACTTGCTCACAAGGTTGAAACTGCCATTGAAGGTGGGAATTTGACAGATATATTGGATCCAGAGGCAGGAGCTTGGCCAATTAAAGAGACACTAGATTTGGCTTTATTGGGACTGAGCTGTGCAGAACTTCGTCGTAGAGACCGGCCTGATTTAAAAGATCAAGTGCTTCCAATACTTGACAGATTAAAAGAAGTTGCTGATAGGGCCCAACAATCTGCTTCAACTGTTACTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATTCTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCTGATGGATATACATATGATCGCAAAGCAATTGATAAGTGGCTTGAAGAGAACGACAATTCACCAATGACCAACATGGCTTTACCTCACAAGCATTTAATTCCTAATTACACACTTTTGTCAGCAATTTTGGAGTGGAAGTCCACAGAATCATGA 1968 0.4096 MKISVSTPRFCTVYAISKGKLSIRQSDMPIDGSIIDDASETSLSSGSSSNYTSTSQTESASVSSYAGLHSSSLATQRFQALSSINSALLSTNPSLSDTSHSRGQSLDLGRENTATSSARNSDIDHALSRVSSCKSFISDTESWMYDQNSIKDVPLATTLPSPNRQAKLNLELEKLRIELRHVQGLHAVAQSEKIEASRKLNDLSKRRSEETMKMKEIIAKEEKAKELAKLEIEKYQDASREAVYLKECAEREAVERKETELKVIRATKEKEKLEDALSGNILQYRKFTWAEIVSATSSFSEDLRIGMGAYGTVYKCNLYHTTVAVKVLNTNGNKNRESKQFQQELEILSRIRHPNLLLLLGACPDRGCLVYEYMENGNLEDRLLRKNNTPPITWYERFRIAWEIASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNFSTMYKDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIEGGNLTDILDPEAGAWPIKETLDLALLGLSCAELRRRDRPDLKDQVLPILDRLKEVADRAQQSASTVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIDKWLEENDNSPMTNMALPHKHLIPNYTLLSAILEWKSTES 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00170 655 SUPERFAMILY Protein kinase-like (PK-like) 282 555 IPR011009 -
Viun1g00170 655 SMART serkin_6 299 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00170 655 MobiDBLite consensus disorder prediction 92 120 - -
Viun1g00170 655 Coils Coil 218 238 - -
Viun1g00170 655 CDD RING-Ubox_WDSUB1-like 586 640 - -
Viun1g00170 655 Coils Coil 254 276 - -
Viun1g00170 655 ProSiteProfiles U-box domain profile. 584 655 IPR003613 GO:0004842|GO:0016567
Viun1g00170 655 PANTHER OS02G0152300 PROTEIN 3 649 - -
Viun1g00170 655 SMART Ubox_2 588 650 IPR003613 GO:0004842|GO:0016567
Viun1g00170 655 SUPERFAMILY RING/U-box 583 652 - -
Viun1g00170 655 MobiDBLite consensus disorder prediction 32 55 - -
Viun1g00170 655 Gene3D Transferase(Phosphotransferase) domain 1 374 584 - -
Viun1g00170 655 Gene3D Phosphorylase Kinase; domain 1 278 373 - -
Viun1g00170 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Viun1g00170 655 Pfam Protein kinase domain 302 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00170 655 ProSiteProfiles Protein kinase domain profile. 299 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00170 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 655 IPR013083 -
Viun1g00170 655 ProSitePatterns Protein kinases ATP-binding region signature. 305 326 IPR017441 GO:0005524
Viun1g00170 655 MobiDBLite consensus disorder prediction 37 55 - -
Viun1g00170 655 Pfam U-box domain 586 653 IPR003613 GO:0004842|GO:0016567
Viun1g00170 655 CDD STKc_IRAK 305 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00170 Viun-Chr1 1101415 1109181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00170 3 653 U-box Gene Family AT4G25160 53.353 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun1g00170 Pkinase 5.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00170 - - gmx:100801699 1092.8