Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00169 ATGGACAAAATTCTGGAAGCAGATGCAAATACTGTATCTCAGCGTTCCTCATCTTCTTCAGTTGTTGCTCTGGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTGAATAAGTTTGTTCCAGAGGGAATGATTATCTTCAAGCTCATACATGTCTATGCTACTATAAAAGGAGTTCCAACGCCATCAACTGCGTTCAAGAAGGAAGTGGAGTGGCAAACAAACCAAATGCTTCTACCTTTCAAGAGATTGTGTGAGCAAAGAAAGGTGCATGTTGATGTTGTACTGATTGAATCAGATGATGTGGCTATTGCAATAGCAGAGGAAGTGGCTAAGGGTGTGATCACCAAACTTGTTGTTGGAGCTTCATCTCGTGGCATATTTAAAAGTAAACAGAAGGGTATATCTATGAAAATATCAGTAAGCACTCCAAGATTTTGCACAGTTTATGCTATTTCGAAGGGAAAATTGTCCATACGACAGTCAGACATGCCGATTGATGGCAGCATTATAGATGATGCTAGTGAAACCAGTTTGTCTTCCGGCAGCTCATCTAACTACACTTCCACCTCTCAGACAGAATCTGCCTCAGTTTCATCATATGCTGGTTTACACTCGTCTTCCCTAGCAACCCAACGATTTCAAGCTCTTTCAAGTATAAATAGTGCCCTCCTAAGCACAAATCCGAGTTTAAGTGACACCAGCCATTCTAGAGGCCAATCTCTAGATCTTGGGAGAGAAAATACTGCAACCAGCTCTGCTAGAAACTCAGACATTGATCATGCCTTAAGTCGAGTCTCTAGTTGCAAAAGCTTTATTTCGGATACTGAATCTTGGATGTATGATCAAAATTCTATAAAGGATGTGCCACTAGCAACTACACTTCCATCACCTAATAGGCAGGCAAAATTGAACCTTGAGCTGGAAAAGTTGAGAATTGAGCTAAGACATGTCCAAGGACTTCATGCGGTAGCTCAAAGTGAGAAAATTGAAGCATCGCGGAAGCTGAATGACCTTAGCAAGAGACGGTCAGAAGAAACCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGAAGGCAAAGGAATTAGCAAAACTAGAAATAGAGAAATATCAGGATGCATCTAGAGAAGCTGTATATTTGAAAGAATGTGCTGAAAGGGAGGCTGTGGAAAGGAAAGAAACAGAGTTGAAAGTCATCCGTGCTACAAAAGAGAAAGAAAAGTTGGAGGATGCTCTTAGTGGTAATATACTGCAGTACCGGAAGTTTACATGGGCTGAAATAGTCTCAGCTACTTCATCTTTTTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAACAGTGTACAAGTGCAATTTGTATCACACAACTGTTGCCGTTAAAGTTCTCAACACTAATGGAAATAAAAATCGTGAAAGCAAGCAATTCCAACAAGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTGGGTGCATGTCCTGATCGTGGATGTCTTGTATATGAATATATGGAGAATGGTAACCTGGAGGACAGACTGCTGAGGAAAAACAACACTCCCCCAATCACATGGTATGAGAGATTTCGAATAGCTTGGGAAATTGCATCAGCTCTTGCCTTTCTTCATAGCTCAAAGCCAGAACCTATCATTCATCGTGACTTAAAACCAGCAAACATCTTGCTTGGACGTAACCTTGTCAGCAAGATTGGTGACATTGGACTCAGTACAGTACTCCATTCCGATAATTTCTCTACCATGTACAAGGACACAGCACCTGTTGGAACACTCTGCTACATTGATCCTGAGTATCAAAGGACTGGTTTAATATCTCCAAAATCTGATGTCTATGCTTTTGGAATGGTGATCCTACAGCTATTGACAGCAAAACCAGCAATAGCACTTGCTCACAAGGTTGAAACTGCCATTGAAGGTGGGAATTTGACAGATATATTGGATCCAGAGGCAGGAGCTTGGCCAATTAAAGAGACACTAGATTTGGCTTTATTGGGACTGAGCTGTGCAGAACTTCGTCGTAGAGACCGGCCTGATTTAAAAGATCAAGTGCTTCCAATACTTGACAGATTAAAAGAAGTTGCTGATAGGGCCCAACAATCTGCTTCAACTGTTACTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATTCTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCTGATGGATATACATATGATCGCAAAGCAATTGATAAGTGGCTTGAAGAGAACGACAATTCACCAATGACCAACATGGCTTTACCTCACAAGCATTTAATTCCTAATTACACACTTTTGTCAGCAATTTTGGAGTGGAAGTCCACAGAATCATGA 2388 0.4091 MDKILEADANTVSQRSSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVYATIKGVPTPSTAFKKEVEWQTNQMLLPFKRLCEQRKVHVDVVLIESDDVAIAIAEEVAKGVITKLVVGASSRGIFKSKQKGISMKISVSTPRFCTVYAISKGKLSIRQSDMPIDGSIIDDASETSLSSGSSSNYTSTSQTESASVSSYAGLHSSSLATQRFQALSSINSALLSTNPSLSDTSHSRGQSLDLGRENTATSSARNSDIDHALSRVSSCKSFISDTESWMYDQNSIKDVPLATTLPSPNRQAKLNLELEKLRIELRHVQGLHAVAQSEKIEASRKLNDLSKRRSEETMKMKEIIAKEEKAKELAKLEIEKYQDASREAVYLKECAEREAVERKETELKVIRATKEKEKLEDALSGNILQYRKFTWAEIVSATSSFSEDLRIGMGAYGTVYKCNLYHTTVAVKVLNTNGNKNRESKQFQQELEILSRIRHPNLLLLLGACPDRGCLVYEYMENGNLEDRLLRKNNTPPITWYERFRIAWEIASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNFSTMYKDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIEGGNLTDILDPEAGAWPIKETLDLALLGLSCAELRRRDRPDLKDQVLPILDRLKEVADRAQQSASTVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIDKWLEENDNSPMTNMALPHKHLIPNYTLLSAILEWKSTES 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00169 795 CDD STKc_IRAK 445 705 - -
Viun1g00169 795 Pfam Protein kinase domain 442 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00169 795 Gene3D HUPs 8 140 IPR014729 -
Viun1g00169 795 ProSitePatterns Protein kinases ATP-binding region signature. 445 466 IPR017441 GO:0005524
Viun1g00169 795 ProSiteProfiles U-box domain profile. 724 795 IPR003613 GO:0004842|GO:0016567
Viun1g00169 795 SMART serkin_6 439 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00169 795 SUPERFAMILY Protein kinase-like (PK-like) 422 695 IPR011009 -
Viun1g00169 795 SUPERFAMILY RING/U-box 723 792 - -
Viun1g00169 795 Coils Coil 394 416 - -
Viun1g00169 795 Coils Coil 358 378 - -
Viun1g00169 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 795 IPR013083 -
Viun1g00169 795 CDD STK_N 23 159 - -
Viun1g00169 795 ProSiteProfiles Protein kinase domain profile. 439 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00169 795 Gene3D Transferase(Phosphotransferase) domain 1 514 724 - -
Viun1g00169 795 Pfam U-box domain 726 793 IPR003613 GO:0004842|GO:0016567
Viun1g00169 795 PANTHER OS02G0152300 PROTEIN 21 789 - -
Viun1g00169 795 CDD RING-Ubox_WDSUB1-like 726 780 - -
Viun1g00169 795 SMART Ubox_2 728 790 IPR003613 GO:0004842|GO:0016567
Viun1g00169 795 MobiDBLite consensus disorder prediction 232 260 - -
Viun1g00169 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
Viun1g00169 795 Gene3D Phosphorylase Kinase; domain 1 418 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00169 Viun-Chr1 1099402 1109181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00169 19 793 U-box Gene Family AT4G25160 51.699 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun1g00169 Pkinase 8.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00169 - - gmx:100801699 1328.15