Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00168 ATGGACAAAATTCTGGAAGCAGATGCAAATACTGTATCTCAGCGTTCCTCATCTTCTTCAGTTGTTGCTCTGGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTGAATAAGTTTGTTCCAGAGGGAATGATTATCTTCAAGCTCATACATGTCTATGCTACTATAAAAGGAGTTCCAACGCCATTGGGAAATGTGATCCCTCTTTCACAAGTGCGTAATGATGTAGCAACTGCGTTCAAGAAGGAAGTGGAGTGGCAAACAAACCAAATGCTTCTACCTTTCAAGAGATTGTGTGAGCAAAGAAAGGTGCATGTTGATGTTGTACTGATTGAATCAGATGATGTGGCTATTGCAATAGCAGAGGAAGTGGCTAAGGGTGTGATCACCAAACTTGTTGTTGGAGCTTCATCTCGTGGCATATTTAAAAGTAAACAGAAGGGTATATCTATGAAAATATCAGTAAGCACTCCAAGATTTTGCACAGTTTATGCTATTTCGAAGGGAAAATTGTCCATACGACAGTCAGACATGCCGATTGATGGCAGCATTATAGATGATGCTAGTGAAACCAGTTTGTCTTCCGGCAGCTCATCTAACTACACTTCCACCTCTCAGACAGAATCTGCCTCAGTTTCATCATATGCTGGTTTACACTCGTCTTCCCTAGCAACCCAACGATTTCAAGCTCTTTCAAGTATAAATAGTGCCCTCCTAAGCACAAATCCGAGTTTAAGTGACACCAGCCATTCTAGAGGCCAATCTCTAGATCTTGGGAGAGAAAATACTGCAACCAGCTCTGCTAGAAACTCAGACATTGATCATGCCTTAAGTCGAGTCTCTAGTTGCAAAAGCTTTATTTCGGATACTGAATCTTGGATGTATGATCAAAATTCTATAAAGGATGTGCCACTAGCAACTACACTTCCATCACCTAATAGGCAGGCAAAATTGAACCTTGAGCTGGAAAAGTTGAGAATTGAGCTAAGACATGTCCAAGGACTTCATGCGGTAGCTCAAAGTGAGAAAATTGAAGCATCGCGGAAGCTGAATGACCTTAGCAAGAGACGGTCAGAAGAAACCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGAAGGCAAAGGAATTAGCAAAACTAGAAATAGAGAAATATCAGGATGCATCTAGAGAAGCTGTATATTTGAAAGAATGTGCTGAAAGGGAGGCTGTGGAAAGGAAAGAAACAGAGTTGAAAGTCATCCGTGCTACAAAAGAGAAAGAAAAGTTGGAGGATGCTCTTAGTGGTAATATACTGCAGTACCGGAAGTTTACATGGGCTGAAATAGTCTCAGCTACTTCATCTTTTTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAACAGTGTACAAGTGCAATTTGTATCACACAACTGTTGCCGTTAAAGTTCTCAACACTAATGGAAATAAAAATCGTGAAAGCAAGCAATTCCAACAAGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTGGGTGCATGTCCTGATCGTGGATGTCTTGTATATGAATATATGGAGAATGGTAACCTGGAGGACAGACTGCTGAGGAAAAACAACACTCCCCCAATCACATGGTATGAGAGATTTCGAATAGCTTGGGAAATTGCATCAGCTCTTGCCTTTCTTCATAGCTCAAAGCCAGAACCTATCATTCATCGTGACTTAAAACCAGCAAACATCTTGCTTGGACGTAACCTTGTCAGCAAGATTGGTGACATTGGACTCAGTACAGTACTCCATTCCGATAATTTCTCTACCATGTACAAGGACACAGCACCTGTTGGAACACTCTGCTACATTGATCCTGAGTATCAAAGGACTGGTTTAATATCTCCAAAATCTGATGTCTATGCTTTTGGAATGGTGATCCTACAGCTATTGACAGCAAAACCAGCAATAGCACTTGCTCACAAGGTTGAAACTGCCATTGAAGGTGGGAATTTGACAGATATATTGGATCCAGAGGCAGGAGCTTGGCCAATTAAAGAGACACTAGATTTGGCTTTATTGGGACTGAGCTGTGCAGAACTTCGTCGTAGAGACCGGCCTGATTTAAAAGATCAAGTGCTTCCAATACTTGACAGATTAAAAGAAGTTGCTGATAGGGCCCAACAATCTGCTTCAACTGTTACTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATTCTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCTGATGGATATACATATGATCGCAAAGCAATTGATAAGTGGCTTGAAGAGAACGACAATTCACCAATGACCAACATGGCTTTACCTCACAAGCATTTAATTCCTAATTACACACTTTTGTCAGCAATTTTGGAGTGGAAGTCCACAGAATCATGA 2430 0.4095 MDKILEADANTVSQRSSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVYATIKGVPTPLGNVIPLSQVRNDVATAFKKEVEWQTNQMLLPFKRLCEQRKVHVDVVLIESDDVAIAIAEEVAKGVITKLVVGASSRGIFKSKQKGISMKISVSTPRFCTVYAISKGKLSIRQSDMPIDGSIIDDASETSLSSGSSSNYTSTSQTESASVSSYAGLHSSSLATQRFQALSSINSALLSTNPSLSDTSHSRGQSLDLGRENTATSSARNSDIDHALSRVSSCKSFISDTESWMYDQNSIKDVPLATTLPSPNRQAKLNLELEKLRIELRHVQGLHAVAQSEKIEASRKLNDLSKRRSEETMKMKEIIAKEEKAKELAKLEIEKYQDASREAVYLKECAEREAVERKETELKVIRATKEKEKLEDALSGNILQYRKFTWAEIVSATSSFSEDLRIGMGAYGTVYKCNLYHTTVAVKVLNTNGNKNRESKQFQQELEILSRIRHPNLLLLLGACPDRGCLVYEYMENGNLEDRLLRKNNTPPITWYERFRIAWEIASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNFSTMYKDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIEGGNLTDILDPEAGAWPIKETLDLALLGLSCAELRRRDRPDLKDQVLPILDRLKEVADRAQQSASTVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIDKWLEENDNSPMTNMALPHKHLIPNYTLLSAILEWKSTES 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00168 809 Gene3D HUPs 8 154 IPR014729 -
Viun1g00168 809 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
Viun1g00168 809 CDD RING-Ubox_WDSUB1-like 740 794 - -
Viun1g00168 809 SUPERFAMILY RING/U-box 737 806 - -
Viun1g00168 809 Gene3D Transferase(Phosphotransferase) domain 1 528 738 - -
Viun1g00168 809 MobiDBLite consensus disorder prediction 246 274 - -
Viun1g00168 809 ProSiteProfiles U-box domain profile. 738 809 IPR003613 GO:0004842|GO:0016567
Viun1g00168 809 Pfam U-box domain 740 807 IPR003613 GO:0004842|GO:0016567
Viun1g00168 809 SUPERFAMILY Protein kinase-like (PK-like) 436 709 IPR011009 -
Viun1g00168 809 Pfam Protein kinase domain 456 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00168 809 PANTHER OS02G0152300 PROTEIN 21 803 - -
Viun1g00168 809 Gene3D Phosphorylase Kinase; domain 1 432 527 - -
Viun1g00168 809 SMART Ubox_2 742 804 IPR003613 GO:0004842|GO:0016567
Viun1g00168 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 809 IPR013083 -
Viun1g00168 809 SMART serkin_6 453 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00168 809 CDD STKc_IRAK 459 719 - -
Viun1g00168 809 CDD STK_N 23 173 - -
Viun1g00168 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672|GO:0006468
Viun1g00168 809 Coils Coil 408 430 - -
Viun1g00168 809 Coils Coil 372 392 - -
Viun1g00168 809 ProSiteProfiles Protein kinase domain profile. 453 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00168 Viun-Chr1 1099402 1109181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00168 19 807 U-box Gene Family AT4G25160 52.791 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun1g00168 Pkinase 9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00168 - - gsj:114409387 1354.35