Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00160 ATGGAGATTAAGCCAAATCTTACTCCTGTCCTTACTGATGCCGCACCCTTGACAAGGTCAAGGCTGGGTGTGCCTTCTGGTTTGTCACCTTATTCTTCTCCAAAAGGGGCAACCTTTCCCCATCATGGTCCCTTTCTGGCTATTCCAAGAAAGAAGACAGGAGGAATTCTTGATGATTTTCGTTCTAGCGGTTGGCTTGATGCCATGAAATCTTCTTCTCCTACTCACAATAAAGTATCCAAGGATCTCAATCATGGAACTGGATCACCTGATGCTGCTTATAGTACCTGGCTGCTAAAGTTTCCATCAGCACTTGCATCTTTTGATCAAATTACTAACTACGCAAAAGGGAAGAGAATAGCATTATTTCTTGATTATGATGGGACTCTTTCACCCATTGTGGACAATCCTGACTGTGCGTTCATGTCAGATAATATGCGTGCTGCTGTTAAAAAAGTGGCGGAATATTTTCCAACTGCAATAATTAGTGGAAGAAAACGTGACAAGGTATATGAATTTGTTGGATTAAGTGACCTCTATTATGCTGGTAGTCATGGGATGGACATTATTGGTCCCCCCAGACAATCTATTTCTGACGATCACCCTGATTCTGATAAGCAGGGTCTTGGTGAACTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTGATGAGGTACTTAGGTTGCTCAAAGAGTGTACAAAAGACGTTGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTATCTGTACATTACCGGAATGTCGATGAGGAGAGTTGGCCTATTGTGGGACAACGTGTATATGATATTTTGAAGCAGTATCCTCGTTTGCGTTTAACTCATGGGCGGATGGTTTTAGAGATTCGGCCAGTGATCGACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGACTCAGCAATAACGATGACGTGCTAACTATATATATTGGAGATGATAAAACAGACGAAGATGCCTTCAAGGTTTTGAGAGAATCTAATAAAGGTTGTGGCATCTTAGTGTCCCCTGCCCCAAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCCTCAGAGGTCATGGAATTTCTGACATCACTTGCTGAATGGAAATCAAGCATTCAAGCTTGCTGA 1152 0.421 MEIKPNLTPVLTDAAPLTRSRLGVPSGLSPYSSPKGATFPHHGPFLAIPRKKTGGILDDFRSSGWLDAMKSSSPTHNKVSKDLNHGTGSPDAAYSTWLLKFPSALASFDQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRKRDKVYEFVGLSDLYYAGSHGMDIIGPPRQSISDDHPDSDKQGLGELNLFQPAAEFLPMIDEVLRLLKECTKDVEGATVENNKFCVSVHYRNVDEESWPIVGQRVYDILKQYPRLRLTHGRMVLEIRPVIDWDKGKAVTFLLESLGLSNNDDVLTIYIGDDKTDEDAFKVLRESNKGCGILVSPAPKESNAVYSLRDPSEVMEFLTSLAEWKSSIQAC 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00160 383 NCBIfam trehalose-phosphatase 117 374 IPR003337 GO:0003824|GO:0005992
Viun1g00160 383 CDD HAD_TPP 121 368 - -
Viun1g00160 383 FunFam Trehalose 6-phosphate phosphatase 120 207 - -
Viun1g00160 383 SUPERFAMILY HAD-like 121 376 IPR036412 -
Viun1g00160 383 FunFam Trehalose 6-phosphate phosphatase 224 383 - -
Viun1g00160 383 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 30 381 IPR044651 GO:0004805|GO:0005992
Viun1g00160 383 NCBIfam HAD-IIB family hydrolase 122 337 IPR006379 -
Viun1g00160 383 Gene3D - 120 209 IPR023214 -
Viun1g00160 383 Gene3D - 210 382 IPR023214 -
Viun1g00160 383 Pfam Trehalose-phosphatase 123 364 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00160 Viun-Chr1 1045650 1048771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00160 114 375 Trehalose Biosynthesis Gene Families AT1G70290 24.731 1.18e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00160 K01087 - gmx:100783008 672.159