Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00153 ATGGCCAAACAAAGCCTTACCCTAATCACTGTCTTCATATCCTTGTTTTCTTTATCTTCCCCATCCCCTTCAAGCAATATTTTCCCTAACACCATTGATTTCTGGTGCAACAAAACACCACATCCTCAAACATGCAAGCATTTTGCCTTGATAAATCGTGAGCCTCGTCAAGATGATATCCCTAAAACGGCATTTCAGTTCAAGAACCTCATTCTCAGAATTGCAATGCAGCAATCAGTGGAAGCCCAGATTCAGATCATGTGGTTGGGAACCAAATGCAGAAGCAAGCAAGAAAAAACAGCATGGTCAAACTGCATAACCCTCTACCAAGACACCATCAACCTTCTCAACCAAGCACTTAACCCTACCAAACAAAGCTCAACCTATGATCTCCAAACATGGCTCAGCACAGCCCTAACCAACATCGACACGTGCCAAACAGGGTTCCACGAGCTCCGAGTTGTCAACAACGTTCTACCCTTCATTCCCAACAAGAACATCTCAGAGATCATAAGTGACTTTTTGGCTCTCAACAATGCTTCTTCTTTCATTCCTCCAAAGACTCACAAAAATGGCTTCCCCACATGGTTATCTCCGAATGACAGGAAGCTTTTGGAGTCGCCACCATCGTTTATACCAGATGTTGTTGTGGCCAAAGATGGTTCTGGGAACTTTGAGACCATCAGAGAAGCTTTGAAAGTAGTCCCCAAGATGAGCCAGAAGAGGTTTGTGATATATGTGAAACGTGGGGTTTACAATGAAAACATTGAGATTGAGAATTCCATGAAGAATGTTATGCTGTATGGTGATGGTATAAAGCTCACCATCATTTCTGGTAGCCGAAGTGTCGGAGGAGGTTTCACCACTTTTGATTCGGCAACCGTCGCGATCAGAGGAGATGGGTTCATTGGACGTGGCATCACATTTCGCAACAGTGCAGGTCCAGAGAAGCACCAAGCAGTGGCGGTGCGTTGTGGTGGTGACTTCTCAGTGTTCTATCGGTGTGGGTTTGAAGGGTACCAAGACACTCTGTATGTGCACTCTCAGAGACAGTTCTACAGAGATTGCTACATCTATGGCACCGTGGATTTCATCTTTGGCAACGCTGCTGTGGTTTTTCAATCCTGCAACATTTACGCAAGAAGACCAATGCAAAAACAGAAAAACGTCATAACAGCACAAGGTAGAACAGATCCAAATCAGAACACTGGGATCTGCATTCAGAATTCACGTGTTATGGCTGCTCAAGACCTAGCCCCTGTGTTGAGTTCCTTCAAGACCTTCTTGGGAAGGCCATGGAGGGAGTATTCAAGGACAGTGTTCCTGCAAACTTACCTTGATGAATTGATTGAGCCTGCAGGGTGGTTGGAGTGGAAAGACGATTTTGCCCTTGAGACTTTGTACTATGGAGAGTTCAAGAACCTTGGCCCTAGGGCTTCCACAAGAGACAGAGTGAAATGGCGTGGCTTCCATGCCATAACAAGTGCAACCGAAGCTTCCAAATTCACAGTTGAGAATTTTATTGGTGGAAGATCATGGTTACCAGACACAGGCATTCCATTTTTCTAA 1569 0.45 MAKQSLTLITVFISLFSLSSPSPSSNIFPNTIDFWCNKTPHPQTCKHFALINREPRQDDIPKTAFQFKNLILRIAMQQSVEAQIQIMWLGTKCRSKQEKTAWSNCITLYQDTINLLNQALNPTKQSSTYDLQTWLSTALTNIDTCQTGFHELRVVNNVLPFIPNKNISEIISDFLALNNASSFIPPKTHKNGFPTWLSPNDRKLLESPPSFIPDVVVAKDGSGNFETIREALKVVPKMSQKRFVIYVKRGVYNENIEIENSMKNVMLYGDGIKLTIISGSRSVGGGFTTFDSATVAIRGDGFIGRGITFRNSAGPEKHQAVAVRCGGDFSVFYRCGFEGYQDTLYVHSQRQFYRDCYIYGTVDFIFGNAAVVFQSCNIYARRPMQKQKNVITAQGRTDPNQNTGICIQNSRVMAAQDLAPVLSSFKTFLGRPWREYSRTVFLQTYLDELIEPAGWLEWKDDFALETLYYGEFKNLGPRASTRDRVKWRGFHAITSATEASKFTVENFIGGRSWLPDTGIPFF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00153 522 CDD PMEI-like_3 35 180 - -
Viun1g00153 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 180 IPR035513 -
Viun1g00153 522 Gene3D - 210 522 IPR012334 -
Viun1g00153 522 Pfam Pectinesterase 214 510 IPR000070 GO:0030599|GO:0042545
Viun1g00153 522 PANTHER PECTINESTERASE 14 515 - -
Viun1g00153 522 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
Viun1g00153 522 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Viun1g00153 522 SMART PMEI_2 27 177 IPR006501 GO:0004857
Viun1g00153 522 FunFam Pectinesterase 209 522 - -
Viun1g00153 522 SUPERFAMILY Pectin lyase-like 214 521 IPR011050 -
Viun1g00153 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Viun1g00153 522 NCBIfam pectinesterase inhibitor domain 3 178 IPR006501 GO:0004857
Viun1g00153 522 ProSitePatterns Pectinesterase signature 2. 358 367 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00153 Viun-Chr1 993861 996406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00153 32 521 Carbohydrate Esterase AT2G45220 56.823 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00153 K01051 - gmx:100776412 870.152