Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00152 ATGGAAACCCTTATTGCAAAACTATGCATCACACTGCTATTCATGTCTTCAATCCTCTCGGTAGCATCATCAAGAAGAGAACCAGCTTCATCCAGCAACGTAGATTGGTGGTGCAACCTAACTCCACACCCTGTGCCATGCAAATACTACATCACCACCACTCAAACCAAGAACCACGATTTTACATTGATCAAGCACAGAACTATCTTCCGAGGAATGCTCGTTGAACATGCCCTGAACCAGGCTCTCATCATGCAGAAAGAAGCACTTCACTCTGACCAAACCAGCATGCCAACAAAGAACCACAGAACCGTTCATGGTGACTGCTTGAAGCTCTATGGAAAAACCATCTTCCACCTCAACCGCACCCTCGGGTGCTTCCACGGGAACCAAAACTGCTCCTCCGTTGATGCACAGACATGGCTCAGCACCGCCCTCACCAACATTCAAACATGTCAGGACGGAACCATCGAACTAGGTGTCGAAGATTTTAAGGCTCCCAACAACAACAACAATGTGACGGAGATGATAAGGAACAGCTTGGCCATCAACATGGACTTCATGAAACACGACCGTCACACCGAAACGGCTCACGAAGAAGCGTTTCCAAGTTGGTTTTCGAAGCCGGAGAGGAAACTGTTGCAGTCCACAACGATAAAGGCTCATGCAGTGGTGGCGAAAGATGGTTCTGGGGATTTCAGAACGGTGCAAGATGCCCTCGATTCTGCGGCAAAGAGGAAGGTGAAGACGAGGTTTGTGATACATGTGAAGAAAGGGGTTTACAAGGAGAATATCGAGGTTGCTGTGCACAACGATAACATCATGCTGGTTGGTGATGGAATCAGAAACACTGTAATCACCAGTAGCAGAAGTGTTCAACAGGGTTACACCACTTATAGCTCTGCAACTGCTGGCATAGATGGTCTCCACTTCATTGCAAGGGACATCACGTTCCAAAACACCGCCGGAGCTCAAAAGGGTCAGGCGGTGGCGCTCCGGTCAGCCTCCGATCTCTCCGTCTTCTACCGGTGCGCCATCATGGGCTTCCAAGACACGCTCATGGCCCATGCACAACGCCAATTTTACAGGCAATGCTACATCTACGGCACCGTTGACTTCATATTTGGCAATGCAGCAGTGGTGTTGCAAAACTGTTACATTTACGCAAGAAAACCCTTAGAGGGCCAAGCCAACATGATCACGGCCCAAGGTCGAGGCGACCCATTTCAAAACTCTGGGATTTCGATCCACAATTCTCAAATTCGGGCCGCCCCGGATCTCAAGCCCGTTGTTGACAAATATAACACCTTCTTGGGTAGGCCTTGGCAACAATACTCGAGAGTTGTGGTCATGAAAACTTTCATAGACAGCTTGGTGAGCCCATTGGGCTGGTCCCCTTGGGATAGTACTAATTTTGCCCAAGACACACTTTATTATGGTGAGTATCAAAACTATGGGCCTGGTGCATCTACAACCAACAGAGTGAAATGGCCCGGGTTTCATGTGATCACGAGCCCTGCTGAAGCGTCCCAATTTACCGTTACACGCCTCCTTGCAGGCCCAACATGGTTGGGCTCTACCACTGTTCCATTTACCTCTGGGCTTTGA 1608 0.4913 METLIAKLCITLLFMSSILSVASSRREPASSSNVDWWCNLTPHPVPCKYYITTTQTKNHDFTLIKHRTIFRGMLVEHALNQALIMQKEALHSDQTSMPTKNHRTVHGDCLKLYGKTIFHLNRTLGCFHGNQNCSSVDAQTWLSTALTNIQTCQDGTIELGVEDFKAPNNNNNVTEMIRNSLAINMDFMKHDRHTETAHEEAFPSWFSKPERKLLQSTTIKAHAVVAKDGSGDFRTVQDALDSAAKRKVKTRFVIHVKKGVYKENIEVAVHNDNIMLVGDGIRNTVITSSRSVQQGYTTYSSATAGIDGLHFIARDITFQNTAGAQKGQAVALRSASDLSVFYRCAIMGFQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVLQNCYIYARKPLEGQANMITAQGRGDPFQNSGISIHNSQIRAAPDLKPVVDKYNTFLGRPWQQYSRVVVMKTFIDSLVSPLGWSPWDSTNFAQDTLYYGEYQNYGPGASTTNRVKWPGFHVITSPAEASQFTVTRLLAGPTWLGSTTVPFTSGL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00152 535 SMART PMEI_2 29 183 IPR006501 GO:0004857
Viun1g00152 535 CDD PMEI-like_3 36 189 - -
Viun1g00152 535 SUPERFAMILY Pectin lyase-like 217 534 IPR011050 -
Viun1g00152 535 Pfam Plant invertase/pectin methylesterase inhibitor 33 183 IPR006501 GO:0004857
Viun1g00152 535 Gene3D - 216 535 IPR012334 -
Viun1g00152 535 Pfam Pectinesterase 223 520 IPR000070 GO:0030599|GO:0042545
Viun1g00152 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 187 IPR035513 -
Viun1g00152 535 NCBIfam pectinesterase inhibitor domain 10 184 IPR006501 GO:0004857
Viun1g00152 535 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Viun1g00152 535 FunFam Pectinesterase 216 535 - -
Viun1g00152 535 PANTHER PECTINESTERASE 17 525 - -
Viun1g00152 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 184 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00152 Viun-Chr1 990866 993016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00152 29 535 Carbohydrate Esterase AT5G51500 55.361 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00152 K01051 - gmx:100800413 915.99