Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00124 ATGGCGATGCGCGACCTCGTTTCCGGTGCTGCTGCTTGCGGCGACTCTTCTTCTTCCTCCGCTAATCCTCTCGCTTCTCTAGCCAACGCTCTTGTTGGCTCTTCCTCCAAAACTCAGGAAAGGCTGAAGGAGATTCCGACATCCACTCCCACTGATCCTACCTCTCAATTTTACTCCACCGCTCTTCCCGTCAATCACCTTCCCGGCTCCGAATTCGATAAGCCTCTATTGGATGCAAACTCTCAGGCTTCGGAGTTTTTGCACAGGTTCCGTGGCGCGAGTGGGCTGGAAGAGACGTGGGATGAGATACAGCGTGAGACCGGGGTTGCCGGACCGCGGCAACTGGTGCCGGCAATTCAACAGCCGCCGTTGGATGGGACACCGCAAAGAGTTCTATCGAGTTTTTTGCACTCGTTTCTTGACAGCAGCCGTGGTGGAGTACCTTTTCATCCTACCCCTCTTCCGATGCTGGGTTTATCCGAAGGTGATAAACAATGCATACGAGACCGTAGCAGCATAATGGCTAGGCATCTGTTTGCAGATAAAAGTGAAGAATTTATCGATGCACAAGTAAATGCACTTCTATGCTCTCTAGATATTGATAGCAATGTCCGTGGTAAGGGACCTATGCCTGAAAGATTTCGGGAGCTTGAGGATTATTGGAATGAATCTCAAGGCAATATGAGACCTGGTCCTCCTCCTGCTGCAGATGGGTGGATTACTGAATTTAGTCAACATAGGGGAAAATATGATAATCCTGATTCATGGGCTAACTCCTTTGAGCAACAACATGGTGCAAATGGTTGGGCGTCTGAATTTGAACATTCCCAATTGTCATCAGTAGGTCAAATGCAAGGTATGAACATGTCAAACTTTGCTGCAATGGAACAGACTCGTATGCTTGCAAATACATTGGCCCAAAATGGTGATCCTAAATTTCAGAACTCAAAATTCCTTCAATTTGTGTCGAAGATGAGCCGTGGTGAGTTGATTATTGATGACAATCAGGTTAAAGAGAATGCATTACCTGCATCTGGAGATTGGGCAACGGAATATGATCAACAATATAATCGTGGTCAAGCATGGGCTGGAGAATATTTAAATGATAAGGTTTATCACGGACCTGATCAGTGGGTGAATGAATATGCAACTGAAGGACGGCAGCATGATGCAACTGATGATCAGTGGGTTAATGAATTTTCAAAGTTGAATGTTAATGATTGGGCAGATGAATTTGGTCAGCAGTTAGGTGAAGCAGCCTTAGGAGACAGCACTTCTGATAGTTGGGCACAAGCATACGATGAGTTCCTAAATGAGCAAGTTGCTTCCAAGCAGCAGTTAGACAGTTCGAGGGGTGTGTATGTCTTTTCAGATTTAAACCCTTATGTTGGTCATCCAAATCCCCTAAAAGAAGGCCAAGATCTATTCAGAAAAGGACTTTTAAGTGAAGCAGTTCTAGCATTGGAAGCAGAAGTCCTAAAAAATCCTGAGAATGCTGAAGGATGGAGACTGCTTGGAATAGCGCATGCAGAGAATGATGATGATCAACAGGCTATTGCAGCAATGATGAAAGCACAGGAGGCTGACCCGACAAACTTGGAGGTGCTTCTTGCTCTTGGTGTTAGTCATACAAATGAACTAGAGCAAACAGCTGCTCTGAAGTATCTATATGGATGGTTGCGCCATCACCCAAAATATGGAACACTTGCCCCGCCTGAGATTTCTGATTCTTTGTACTATGCTGATGTTGCTAGGTTATTCAATGAAGCTGCTGAAGTGTCTCCGGATGATGCAGATGTCCACATAGTTCTTGGGGTCATGTATAACTTATCCAGAGAATATGACAAAGCTATTGCATCTTTTGAAAGAGCACTGAAACTTAAGCCACAGGATTACTCATTATGGAACAAACTGGGTGCTACACAGGCAAACAGTATTCAAAGTGCTGATGCAATAATGGCTTATCAACAGGCACTTGATTTAAAGCCTAACTATGTTCGTGCTTGGGCAAATATGGGTATCAGTTATGCAAACCAGGGTATGTACGACGAGTCCATTCGATATTATGTTCGAGCACTTGCCATGAATCCAAAAGCAGAGAATGCATGGCAATATTTGAGAATTTCATTAAGCTGTGCTTCTAGGAATGACATGTTAGAAGCTTGTGATAGTCGTAATTTGGACCTTCTCCAGAAGGAGTTTCCACTACAGTAA 2214 0.4444 MAMRDLVSGAAACGDSSSSSANPLASLANALVGSSSKTQERLKEIPTSTPTDPTSQFYSTALPVNHLPGSEFDKPLLDANSQASEFLHRFRGASGLEETWDEIQRETGVAGPRQLVPAIQQPPLDGTPQRVLSSFLHSFLDSSRGGVPFHPTPLPMLGLSEGDKQCIRDRSSIMARHLFADKSEEFIDAQVNALLCSLDIDSNVRGKGPMPERFRELEDYWNESQGNMRPGPPPAADGWITEFSQHRGKYDNPDSWANSFEQQHGANGWASEFEHSQLSSVGQMQGMNMSNFAAMEQTRMLANTLAQNGDPKFQNSKFLQFVSKMSRGELIIDDNQVKENALPASGDWATEYDQQYNRGQAWAGEYLNDKVYHGPDQWVNEYATEGRQHDATDDQWVNEFSKLNVNDWADEFGQQLGEAALGDSTSDSWAQAYDEFLNEQVASKQQLDSSRGVYVFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKNPENAEGWRLLGIAHAENDDDQQAIAAMMKAQEADPTNLEVLLALGVSHTNELEQTAALKYLYGWLRHHPKYGTLAPPEISDSLYYADVARLFNEAAEVSPDDADVHIVLGVMYNLSREYDKAIASFERALKLKPQDYSLWNKLGATQANSIQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPKAENAWQYLRISLSCASRNDMLEACDSRNLDLLQKEFPLQ 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00124 737 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515
Viun1g00124 737 MobiDBLite consensus disorder prediction 33 56 - -
Viun1g00124 737 ProSiteProfiles TPR repeat profile. 598 631 IPR019734 GO:0005515
Viun1g00124 737 ProSiteProfiles TPR repeat profile. 499 532 IPR019734 GO:0005515
Viun1g00124 737 FunFam Peroxisome biogenesis protein 5 448 736 - -
Viun1g00124 737 ProSiteProfiles TPR repeat region circular profile. 598 631 - -
Viun1g00124 737 Pfam Tetratricopeptide repeat 667 698 IPR001440 GO:0005515
Viun1g00124 737 Pfam Tetratricopeptide repeat 598 631 IPR001440 GO:0005515
Viun1g00124 737 SMART tpr_5 632 665 IPR019734 GO:0005515
Viun1g00124 737 SMART tpr_5 666 699 IPR019734 GO:0005515
Viun1g00124 737 SMART tpr_5 598 631 IPR019734 GO:0005515
Viun1g00124 737 SMART tpr_5 499 532 IPR019734 GO:0005515
Viun1g00124 737 ProSiteProfiles TPR repeat profile. 632 665 IPR019734 GO:0005515
Viun1g00124 737 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 734 IPR024111 -
Viun1g00124 737 SUPERFAMILY TPR-like 450 736 IPR011990 GO:0005515
Viun1g00124 737 Gene3D Tetratricopeptide repeat domain 446 737 IPR011990 GO:0005515
Viun1g00124 737 ProSiteProfiles TPR repeat region circular profile. 666 698 - -
Viun1g00124 737 Pfam Tetratricopeptide repeat 469 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00124 Viun-Chr1 865379 877564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00124 611 729 Glycosyltransferase AT3G04240 31.933 6.61e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00124 K13342 - gmx:100527272 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00124 1 865379 877564 Viun1g00124 1 865379 877564 ECH