Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00109 ATGAAAAGAGCGAAACCATACCTCACGAGGAACATGTCGTGGTCACCACGAGAAGAACCACCAACAGTAGTAATTGTTAGCTCCCTTCTTCTGATTATTGCGTTATTCGTTACAGTAACAATCGCAGAAGCAGAATCAGAAACAGCATCAACCTCCCACGACGACGCGCTTCTCCTCCTCCGCTTCAAGCAGTTCCACGTTTCCTCCGACCCCCGCGGCTTCCTCTCCGACTGGCTCCCCCACGCGCCGTCCCCCTGCGCGTGGCGCGGCGTCACCTGCTCGCCCGAGCCACGCCGCGTCACCGCCATCGACCTCGCCGGCGCCGACCTCTCCGGCACCCTCCACCTCCCCACACTCACGTCCCTCCCCTCGCTAAGCACCCTCCTCCTGCGTGGTAACTCCTTCTCCGCTTTCAATCTCAGCGTTTCGCCGTTTTGCTCGCTTCAAACACTCGACCTCTCTCTCAACAACTTCTCCGGCAAGTTTCCTTTCGCAAACCTAACTCCATGTAACCGCCTCGCTTACTTAAACCTCTCGAATAATCTCATCACCGCTGGGCTCGGCCCTGGGCCTGGCTCTGGGCTTTCCCTGGCCCAACTCGACCTGTCCAGAAACCTCGTCTCCGACGTGAACCTTCTCGTGTCCGCTCTCGCGAGCTCCGCTCTCGTTTATCTGAACTTCTCCGACAACAGACTCGCGGGTCAACTCAGCGGGTCGCTCGTTTCTCGAAGCGCGAACCTCTCCACCTTGGACCTCTCCTACAACCTTCTCTCCGGGTCGGTGCCGCCTCAGCTCGTGAATGACGCCGTTCGGGTTCTCGATTTCTCGTTCAACAACTTCTCGCGGCTGGATTTCGCCTCGTGCGGGAGCCTGACGCGGTTGAGCTTCTCGCGCAATGCGCTCTCCGGGGACGAGTTTCCGCGCGGGTTGAGCAGCTGCGATAGGCTCGAGGTTCTGGATCTTTCTCGCAATGAGTTCGTAGCCGAGATTCCCGGGGAGATTCTTCGGAGTTTGAGGAGCTTGAAGTCTCTGTTTCTCGACCGCAACAAATTCTCCGGCGAGATTCCGAGCGAGCTCGGAAGCCTCTGTGGAAGTCTCGTGGAACTTGATCTCTCCGAGAACAAGCTTTCTGGTGAGTTGCCTTTGAGCTTCGTGAACTGTTCTTCTCTGCGGAGTTTGAACCTCGCGAGGAACTATCTCTCTGGGAACTTCCTCGTGTCCGTGGTTAGCAAGCTTCAGAGTCTTGAGTATCTGAACGCCGCGTTTAATAACCTAACGGGACAGGTTCCGTTGTCGCTTGTTAACCTGAAACGGCTTCGGGTGCTTGACTTGAGCTCGAACCGGTTAAACGGCAATGTTCCGTCGTTCTTTTGCCCTTCCGAGTTGGAGAAGTTGATCCTGGCGGGCAATTACTTTTCCGGGACGGTGCCGTCACAGCTCGGTGATTGTAAGAATTTGAGAACCGTTGATTTCAGCTTTAACAGCTTGAACGGTTCGATTCCGTGGGAGGTTTGGGCTTTGCCCAACCTCTCTGATTTGATTATGTGGGCGAATAATCTCACTGGGGAAATCCCAGAAGGAATTTGTGTTAAAGGAGGGAACTTGGAGACTTTGATTCTCAACAATAACTTCATTTCTGGGTCAATTCCAAAGTCAATTGCCAATTGCACCAACATGATATGGGTGTCGCTGGCGAGCAACAGGTTGACCGGAACGATACCTTCTGGGATTGGGAAATTGAACGCATTGGCGATTCTCCAGCTGGGGAACAACTCGCTGAGTGGGAGGATTCCACCGGAGATAGGCAAGTGTGGGAAGTTGATATGGTTAGATTTGAATAGCAATAACCTAACTGGGAATATCCCGTTTGAGCTTGCTGATCAAGCCGGATTGGTTATCCCGGGCAAGGTTTCAGGGAAGCAGTTTGCGTTTGTGAGGAACGAGGGTGGGACTAGTTGCAGGGGTGCTGGTGGGTTGGTTGAGTTTGAGGATATCAGAACGGAGAGGCTTGAAGGTTTTCCCATGGTGCATTCGTGCCCATTGACGCGGATTTACTCCGGTTGGACCGTGTATACTTTTTCTTCCAATGGGAGCATGATCTACCTTGACCTTTCCTACAACTTGTTGTCTGGGACTATTCCTGGGAATATGGGTGGCATGGCCTATTTGCAGGTGTTGAATTTGGGGCACAATAGGCTGAGTGGGAACATTCCAGATAGTTTTGGTGGTTTGAAAGCAATTGGGGTGCTTGATCTGTCACATAATAGTCTCAATGGATCCATCCCTGGTTCATTGGAGAGCCTTTCTTTTCTCAGTGACCTTGACGTCTCTAATAATAATCTCACCGGCTCCATTCCTTCTGGAGGTCAGTTGACTACTTTTCCAGCTTCTAGATACGAGAACAACTCTGGCCTTTGTGGCCTGCCGCTGCCATCGTGTAGTGCTTTGAAGAACCGCTCAGTGGGTGTTGGGGGTTGGAAGAAGAAGCAGCCTGTAGCAGCTGGGGTTGTCATTGGTTTGCTTTGCTTCCTCTTGTTTGCGCTTGGGCTTGTGTTGGCTTTGTACAGGGTGAGAAAGTCTCAGAGGAAGGAGGAGATTAGAGAAAAGTATATAGAGAGTCTTCCCACTTCGGGGAGCAGTAGTTGGAAGCTTTCCAGCTTTCCTGAGCCTCTGAGCATCAATGTTGCCACCTTTGAGAAGCCACTGCGGAAGCTGACGTTCGCACATCTTCTCGAGGCTACTAATGGTTTCAGTGCTGAGAGTTTGATTGGCTCTGGGGGATTTGGTGAAGTGTACAAGGCTAAGCTGAAAGATGGCTGTGTTGTTGCCATCAAGAAGCTCATTCATGTGACGGGTCAGGGAGATAGGGAGTTCATGGCTGAGATGGAAACTATTGGGAAGATTAAGCATAGGAACCTGGTTCAGCTGCTGGGTTACTGTAAAGTTGGGGAGGAGAGGCTTCTTGTGTACGAGTTCATGAAATGGGGAAGTCTTGAGGCTGTTTTACATGAAAGGGCAAAAGGAGGAGGTTCAAATCTTGATTGGGGTGCAAGAAAAAAGATTGCCATTGGGTCAGCAAGAGGTCTTGCATTTCTTCATCATAGTTGCATTCCTCACATTATACACAGGGACATGAAGTCCAGCAACATTCTACTTGATGAAAATTTCGAGGCTAGAGTTTCTGATTTTGGCATGGCAAGATTGGTCAATGCCCTCGATACTCATCTAACTGTCAGCACACTTGCCGGAACACCAGGTTATGTACCCCCTGAGTACTACCAGAGTTTTCGATGTACAGCTAAAGGGGATGTCTATAGCTATGGTGTCATACTGCTTGAGCTTCTATCTGGTAGAAGGCCAATCGACTCTTCCGAGTTTGGTGATGACAACAATCTTGTTGGTTGGTCTAAGAAGCTTTACAAAGAGAAGAGAATTAATGAAATACTTGATCCTGATTTAATTGTGCAAACATCTGGTGAAAGTGAACTATTTCAATATTTGAGAATTGCCTTTGAGTGTCTAGATGAGAGGCCCTACCGTCGGCCGACCATGATACAAGTGATGGCCATGTTCAAAGAGCTTCAGGTTGACACAGATAATGATACGCTTGATAGCTTCTCTCTGAGAGACAGTGTCATTGATGAAGCATGA 3651 0.5034 MKRAKPYLTRNMSWSPREEPPTVVIVSSLLLIIALFVTVTIAEAESETASTSHDDALLLLRFKQFHVSSDPRGFLSDWLPHAPSPCAWRGVTCSPEPRRVTAIDLAGADLSGTLHLPTLTSLPSLSTLLLRGNSFSAFNLSVSPFCSLQTLDLSLNNFSGKFPFANLTPCNRLAYLNLSNNLITAGLGPGPGSGLSLAQLDLSRNLVSDVNLLVSALASSALVYLNFSDNRLAGQLSGSLVSRSANLSTLDLSYNLLSGSVPPQLVNDAVRVLDFSFNNFSRLDFASCGSLTRLSFSRNALSGDEFPRGLSSCDRLEVLDLSRNEFVAEIPGEILRSLRSLKSLFLDRNKFSGEIPSELGSLCGSLVELDLSENKLSGELPLSFVNCSSLRSLNLARNYLSGNFLVSVVSKLQSLEYLNAAFNNLTGQVPLSLVNLKRLRVLDLSSNRLNGNVPSFFCPSELEKLILAGNYFSGTVPSQLGDCKNLRTVDFSFNSLNGSIPWEVWALPNLSDLIMWANNLTGEIPEGICVKGGNLETLILNNNFISGSIPKSIANCTNMIWVSLASNRLTGTIPSGIGKLNALAILQLGNNSLSGRIPPEIGKCGKLIWLDLNSNNLTGNIPFELADQAGLVIPGKVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYSGWTVYTFSSNGSMIYLDLSYNLLSGTIPGNMGGMAYLQVLNLGHNRLSGNIPDSFGGLKAIGVLDLSHNSLNGSIPGSLESLSFLSDLDVSNNNLTGSIPSGGQLTTFPASRYENNSGLCGLPLPSCSALKNRSVGVGGWKKKQPVAAGVVIGLLCFLLFALGLVLALYRVRKSQRKEEIREKYIESLPTSGSSSWKLSSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKVGEERLLVYEFMKWGSLEAVLHERAKGGGSNLDWGARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGRRPIDSSEFGDDNNLVGWSKKLYKEKRINEILDPDLIVQTSGESELFQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTDNDTLDSFSLRDSVIDEA 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00109 1216 Pfam Leucine Rich Repeat 534 556 IPR001611 GO:0005515
Viun1g00109 1216 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 282 470 - -
Viun1g00109 1216 Pfam Brassinosteroid receptor island domain 630 694 IPR045381 -
Viun1g00109 1216 Pfam Protein kinase domain 919 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00109 1216 Gene3D Phosphorylase Kinase; domain 1 880 992 - -
Viun1g00109 1216 SMART serkin_6 917 1191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00109 1216 PRINTS Leucine-rich repeat signature 366 379 - -
Viun1g00109 1216 PRINTS Leucine-rich repeat signature 436 449 - -
Viun1g00109 1216 Pfam Leucine rich repeat N-terminal domain 53 94 IPR013210 -
Viun1g00109 1216 SUPERFAMILY L domain-like 66 401 - -
Viun1g00109 1216 Pfam Leucine rich repeat 723 781 IPR001611 GO:0005515
Viun1g00109 1216 FunFam Serine/threonine-protein kinase BRI1-like 1 637 694 - -
Viun1g00109 1216 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 692 813 - -
Viun1g00109 1216 Gene3D Ribonuclease Inhibitor 195 814 IPR032675 -
Viun1g00109 1216 Gene3D Ribonuclease Inhibitor 55 169 IPR032675 -
Viun1g00109 1216 SUPERFAMILY RNI-like 334 623 - -
Viun1g00109 1216 SUPERFAMILY L domain-like 690 810 - -
Viun1g00109 1216 FunFam Brassinosteroid LRR receptor kinase 993 1196 - -
Viun1g00109 1216 SUPERFAMILY Protein kinase-like (PK-like) 898 1191 IPR011009 -
Viun1g00109 1216 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 529 621 - -
Viun1g00109 1216 FunFam serine/threonine-protein kinase BRI1-like 2 878 992 - -
Viun1g00109 1216 ProSiteProfiles Protein kinase domain profile. 917 1194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00109 1216 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 219 362 - -
Viun1g00109 1216 Gene3D - 637 694 - -
Viun1g00109 1216 SMART LRR_typ_2 744 767 IPR003591 -
Viun1g00109 1216 SMART LRR_typ_2 720 743 IPR003591 -
Viun1g00109 1216 SMART LRR_typ_2 245 268 IPR003591 -
Viun1g00109 1216 SMART LRR_typ_2 313 337 IPR003591 -
Viun1g00109 1216 SMART LRR_typ_2 768 791 IPR003591 -
Viun1g00109 1216 SMART LRR_typ_2 436 459 IPR003591 -
Viun1g00109 1216 SMART LRR_typ_2 338 362 IPR003591 -
Viun1g00109 1216 SMART LRR_typ_2 580 604 IPR003591 -
Viun1g00109 1216 SMART LRR_typ_2 507 531 IPR003591 -
Viun1g00109 1216 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1040 1052 IPR008271 GO:0004672|GO:0006468
Viun1g00109 1216 Pfam Leucine Rich Repeat 340 354 IPR013101 -
Viun1g00109 1216 Gene3D Transferase(Phosphotransferase) domain 1 993 1211 - -
Viun1g00109 1216 ProSitePatterns Protein kinases ATP-binding region signature. 923 946 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00109 Viun-Chr1 774048 779013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00109 29 1215 Receptor kinase-like Gene Family AT1G55610 62.739 0.0 1446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Viun1g00109 Pkinase 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00109 - - gmx:102670093 1960.27