Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00106 ATGGCTGGGATTGATGATAATGTTGCCCTTTCTGGCGATTGGGGTCTTGCTAGCCCAAGTCCAAGAACATTTTTCTCTAGAATGTTGGAGGAAGAAAATGTAACAAGATCAATCTCAGAGCATTCTGGGAGTGGTAGAACTGGGGAATTCTTTTCAGGACCACATGAGCCTAGTGAAACAGGAAAGGGAAACATGCAGGATGCAGCACAAGATGGAGATTCTGTAGCCCAATTGAGTTTTCAGACTGAGCAAAAGCCTAACTCCAGAGGTGGTCTTGTGGAAAGAATGGCTGCTAGAGCTGGATTTAATGCTCCTAGGTTGAACACTGAAGGCATTAGATCTACTGATCTTTCACTCAATTCTGACATTCAGTCTCCTTACTTGACCATCCCACCAGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCATCTCCAACAACTGGAAAGTTTCTGTTTATGTCAAATGGCAACATGCGGCACTCAGAATTATCATCTGATGCTCCAGAAAAATGTAAAAATAATGGCTTTGATGATATCTATACATCATCCTTTGCTTTCAAGCCTGCAACAGACTCAGGCTCCTCTTTCTATCATGGTGCTGGAAGAAAAATAAATCCAACTACACTTCCTCAACAATCCCATCCTGGTATTGAGGTTTCAGCTCAGTCAGAAAATTCTTTTCATTCTCAAAGTGTCGATGCTGTCAAAGTTCAAACTGAGAACAAAAATGGTCTTCATCTTCAGGCAGACTTTGCCGAATCGCCTCCTGAAAAGGATATTAAAATGTTTCGAGCTGATCAAAGGGCTTTTGATGCTGTTGGTGGTGGCATTGAACATTCTACCCCAGTTGAAGAGCATGGAGATGAAGAAGGAGATCAGAGAGGCAATGGAGATTCAGTGACTGGTGGCGTTGGGGGTGCACCATCTGATGATGGATATAACTGGAGAAAATATGGCCAAAAACAAGTGAAAGGCAGCGAGTACCCTCGAAGTTACTACAAGTGCACACATCCAAACTGTCAAGTTAAGAAGAAAGTAGAACGATCCCATGAAGGCCACATAACTGAGATCATCTACAAGGGAACACACAACCATCCAAAACCTCCTCCAAGTCGCCGATCAGGTATAGGTTCGGTTAACCCTCACACTGACATGCAAGTTGACAACCCTGAACATGTTGAACTACACAATGGTGGTGACGGCGACATCGGCTGGGGTAATGTGCAAAAGGGAAACATAGTTGGAGCTGCTAACTGGAAGCATGAAAACCTTGAAACAACATCATCAGCGTCTATTGGCCCCGAGTACTGCAACCAGTCCACCAATTTGCAGACGCAAAATGGTGGTACTCTCAATGATTCAGGAGAGGCAGTTGATGCCTCGTCTACTTTTTCTAACGAAGAAGATGAAGATGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCAGAGTCTAAGAGAAGGAAACTGGAATCATATGCTGACCTGAGTGGAGCTACTAGAGCCATCCGTGAGCCTAGAGTTGTTGTACAAACTACCAGTGAGGTAGATATCCTCGATGATGGTTATCGGTGGCGCAAGTATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACAAATGCAGGCTGCACAGTAAGGAAACATGTGGAGAGAGCATCACACGATCTTAAATCCGTGATCACCACTTATGAGGGAAAGCACAACCATGATGTTCCTGCTGCTCGTGCCAGCAGCCATGTCAATGCTAATGCTTCCAATGCCAACCAAGCTTCCGGTGTTCTTCACAGCCATGTTCATAGACCTGAACCATCACAAGTACACAATGGCATGGGAAGGCTTGAGAGGCCGTCCCTAGGCTCGTTTAACCTACCCGGAAGACAGCAGCTAGCTCATTCCCACGGCTTCTCCTTCGGCATGAACCAACCGATGCTATCAAATCTGGCAATGTCAGGGTTAGGCCACATGCAAGCCAAGCTCCCTGTCATGCCTGTTCATCCATTCTTGGCACAGCAACAACAGCAAAATCCTTCAAACGATTACGGTTTCATGATGCCAAAGGGAGAGCCAAATGTGGAGGCTATTCCTGAACATGTTGGTGGCCTTAACCTGCCAAATGGCTCATCAGTGTACCAAGAAATCATGAGTCGCATGCCCCTTGGACCTCACATGTAA 2244 0.4541 MAGIDDNVALSGDWGLASPSPRTFFSRMLEEENVTRSISEHSGSGRTGEFFSGPHEPSETGKGNMQDAAQDGDSVAQLSFQTEQKPNSRGGLVERMAARAGFNAPRLNTEGIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMSNGNMRHSELSSDAPEKCKNNGFDDIYTSSFAFKPATDSGSSFYHGAGRKINPTTLPQQSHPGIEVSAQSENSFHSQSVDAVKVQTENKNGLHLQADFAESPPEKDIKMFRADQRAFDAVGGGIEHSTPVEEHGDEEGDQRGNGDSVTGGVGGAPSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPPPSRRSGIGSVNPHTDMQVDNPEHVELHNGGDGDIGWGNVQKGNIVGAANWKHENLETTSSASIGPEYCNQSTNLQTQNGGTLNDSGEAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYADLSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNANQASGVLHSHVHRPEPSQVHNGMGRLERPSLGSFNLPGRQQLAHSHGFSFGMNQPMLSNLAMSGLGHMQAKLPVMPVHPFLAQQQQQNPSNDYGFMMPKGEPNVEAIPEHVGGLNLPNGSSVYQEIMSRMPLGPHM 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00106 747 MobiDBLite consensus disorder prediction 370 413 - -
Viun1g00106 747 Gene3D WRKY domain 311 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 SMART WRKY_cls 319 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 SMART WRKY_cls 536 595 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 MobiDBLite consensus disorder prediction 216 241 - -
Viun1g00106 747 MobiDBLite consensus disorder prediction 63 88 - -
Viun1g00106 747 Pfam WRKY DNA -binding domain 537 593 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 ProSiteProfiles WRKY domain profile. 320 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 ProSiteProfiles WRKY domain profile. 531 596 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 MobiDBLite consensus disorder prediction 285 326 - -
Viun1g00106 747 SUPERFAMILY WRKY DNA-binding domain 528 596 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 SUPERFAMILY WRKY DNA-binding domain 318 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 140 615 IPR044810 GO:0003700
Viun1g00106 747 Gene3D WRKY domain 523 589 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun1g00106 747 FunFam WRKY transcription factor 33 523 589 - -
Viun1g00106 747 MobiDBLite consensus disorder prediction 440 472 - -
Viun1g00106 747 MobiDBLite consensus disorder prediction 1 89 - -
Viun1g00106 747 FunFam WRKY transcription factor 311 379 - -
Viun1g00106 747 MobiDBLite consensus disorder prediction 291 305 - -
Viun1g00106 747 MobiDBLite consensus disorder prediction 440 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00106 Viun-Chr1 759590 764064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00106 1 742 WRKY Transcription Factor Family AT5G56270 48.903 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun1g00106 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00106 K18835 - gmx:100127395 1295.03