Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00096 ATGTCGGAGAACGATCAGCGCCGTCTTCTGGGGCTGTCGGAGGATGACGTGGAAGCTCGAGGGTCGGAATTGGCCGTCGTCAATGGCGGCGGCGGCGGCATCAACAGCAACAACAAAGGTTTGAGGGATTTGTTAAGGTTGCCGGGTCACCGACAGAGTTTAAAGCGCGTTGAGAAGGAAGAAGATAGAGATAGAGACAGGGATAGAGATAGAAGGGAACAGAACCGGCATCACCACGATGTGGATCTTGATTCTTCTGTTGAGGTCCTTGGCGACAGTGCACCTCCTGAATGGGCGTTGCTACTCATTGGTGGCCTCATTGGACTCACAACTGGCCTCTTTGTTGCCTTTTTCAATAAAGGGGTGCATATAATACATGAATGGGTATGGGCTGGTACTCCAATTGAGGGTGCTGCCTGGCTTCGTATTCAGAGATTGGCTGATACATGGCATCGAATCCTTTTAATACCTGTCACTGGAGGAGTCATTGTCGGAATGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAATCCACGGCCTCTCAAACACAAGGTTTTGATTTTCTTGCAGGAATCTTTCCGACAATAAAGGCTATTCAGGCTGCAGTTACTTTAGGTACTGGCTGTTCATTGGGGCCTGAAGGTCCTAGTGTTGATATTGGGAAGTCATGTGCCAATGGATTCTCGCTAATAATGGAACACAACAGAGAAAGGAAAATAGCACTTGTTGCTGCTGGTGCAGCCGCTGGAATTTCGTCAGGCTTCAATGCACCAGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTGCTGAGGCCTCTCCGAGCAGAGAACTCTCCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATCTCATCAACTGTATCAAATGTTTTACAGGGGATCAAATCAGCTTTTACGATACCCGAGTATGATTTGAAATCTGCTGCTGAGCTACCTCTATACCTGATATTGGGAATGCTTTGTGGTGTTATAAGTGTGGCCATGACTCGTTTGGTTGCTTGGTTCACCAAATTTTTTAAGTTTATTCAGGATAAATTTGGCATTCCTACTGTGGTCTGCCCTGCTTTAGGTGGCTTCGGGGCTGGGATTATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTTTACGTACTGGAAAGAGTGCTTCAGCCCCTGGAATATGGCTTCTAACTCAATTGGTAGTTTCTAAGGTCATTGCAACAGCTCTTTGCAAGGGATCTGGGCTAGTTGGTGGTCTTTATGCACCAAGTTTAATGATAGGTGCTGCAGCTGGTGCTGTATTTGGAGGCTTTTCCGCTGAAGTTATTAATTCAGCAATTCCTGGAAATGCTGCTGTTGCTCAGCCCCCGGCATATGCTCTGGTTGGAATGGCGGCTACATTAGCATCTGTTTGTTCTGTTCCTTTGACTTCAGTTCTACTTCTGTTCGAGCTGACAAAAGATTATAGGATACTGCTTCCACTCATGGCAGCTGTTGGATTGGCAATATGGGTTCCTTCAGTGACAAACCAGGCGAAGGAGAGTGATACACCCGATGCAAGTAGCTCACTAAGAGGATATTCTCCAGTTTCACATGCTGGAGATGATAATGAGGGTAACTGGAGACAAGTTAATGATGGGAATGATTTAGAGCTCCATGTTGTTGGGGATGGCGCTGATCTTGAAACAATTGACAAGGAACTTCTTCTTGACAATCTTCAGGTTTCTCAGGCAATGTCGAAACAATATTGTAAGGTTTTGTCATCTGCAATCCTGAAAGATGCAATAAAATTGATGCATGACAGCCAGCAGAATTGTGTGCTGGTAGTTGATAAAGAAGATTTTCTAGAAGGAATATTGACATATGGTGACATAAGAAGGTGTCTGTCTCAGGAATCTCATGACCCTTTGAAGAGTGGATTAGTGGTTGTGGATTCAAACACATGCCTTGTTTCCTCTGTTTGTACTCGAGGGATGAGCTATCGTGGACGAGTGCGAGGAATTTTGACCTGCTATCCCAATACTACCTTGGCTATGGCCAAAGAGTTGATGGAAGCCAAGGGCATTAAGCAATTACCAGTGGTTAAACGTGGTGGAGATCAGAATAGAGAAAGAAAGAGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCAATGTCTCAGGAAAGAGATTAATCACAGGCAAACAGCATATCAAAATATGACAGATAACAGTTTGGCAGTGACAACAACAAATGGGCATTAA 2283 0.4442 MSENDQRRLLGLSEDDVEARGSELAVVNGGGGGINSNNKGLRDLLRLPGHRQSLKRVEKEEDRDRDRDRDRREQNRHHHDVDLDSSVEVLGDSAPPEWALLLIGGLIGLTTGLFVAFFNKGVHIIHEWVWAGTPIEGAAWLRIQRLADTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSTASQTQGFDFLAGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLIMEHNRERKIALVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGIKSAFTIPEYDLKSAAELPLYLILGMLCGVISVAMTRLVAWFTKFFKFIQDKFGIPTVVCPALGGFGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLTQLVVSKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSAIPGNAAVAQPPAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMAAVGLAIWVPSVTNQAKESDTPDASSSLRGYSPVSHAGDDNEGNWRQVNDGNDLELHVVGDGADLETIDKELLLDNLQVSQAMSKQYCKVLSSAILKDAIKLMHDSQQNCVLVVDKEDFLEGILTYGDIRRCLSQESHDPLKSGLVVVDSNTCLVSSVCTRGMSYRGRVRGILTCYPNTTLAMAKELMEAKGIKQLPVVKRGGDQNRERKRRIVGLLHYDALWQCLRKEINHRQTAYQNMTDNSLAVTTTNGH 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00096 760 PRINTS Chloride channel signature 250 269 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g00096 760 PRINTS Chloride channel signature 486 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g00096 760 PRINTS Chloride channel signature 427 447 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g00096 760 PRINTS Chloride channel signature 199 218 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g00096 760 PRINTS Chloride channel signature 468 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g00096 760 MobiDBLite consensus disorder prediction 23 79 - -
Viun1g00096 760 Pfam CBS domain 678 725 IPR000644 -
Viun1g00096 760 Pfam CBS domain 586 640 IPR000644 -
Viun1g00096 760 MobiDBLite consensus disorder prediction 44 79 - -
Viun1g00096 760 MobiDBLite consensus disorder prediction 523 539 - -
Viun1g00096 760 SUPERFAMILY Clc chloride channel 96 520 IPR014743 -
Viun1g00096 760 CDD Voltage_gated_ClC 114 513 - -
Viun1g00096 760 SUPERFAMILY CBS-domain pair 584 738 IPR046342 -
Viun1g00096 760 MobiDBLite consensus disorder prediction 523 553 - -
Viun1g00096 760 Gene3D - 572 733 IPR046342 -
Viun1g00096 760 ProSiteProfiles CBS domain profile. 675 742 IPR000644 -
Viun1g00096 760 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 23 745 - -
Viun1g00096 760 Pfam Voltage gated chloride channel 191 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g00096 760 Gene3D Clc chloride channel 85 529 - -
Viun1g00096 760 FunFam Chloride channel protein 571 730 - -
Viun1g00096 760 CDD CBS_pair_voltage-gated_CLC_euk_bac 590 730 - -
Viun1g00096 760 ProSiteProfiles CBS domain profile. 590 647 IPR000644 -
Viun1g00096 760 SMART cbs_1 678 734 IPR000644 -
Viun1g00096 760 SMART cbs_1 593 641 IPR000644 -
Viun1g00096 760 FunFam Chloride channel protein 88 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00096 Viun-Chr1 681693 697743 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00096 K03281 - gmx:100787625 1284.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00096 1 681693 697743 Viun1g00096 1 681693 697743 ECH