Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00054 ATGTCGATGCTGCTGAGGAAGGCCTGGGATATGGTGTTGTGGAGATCTGACTCGTCACCATCATCATCATCATCATCATCCATATCAACAGCAACAACAACTGCAACAAGATTTTCACTTGAAGTGGCACATTCTGACATGGGTGAATTGGAGCAGCTACCCAGTGACATCTTGATGCAAATTCTGAAGCTTTTGGGTCCAAAAGCGGTGGCAAAATTAAGTGTGGTTTGCAAGAGTTTGAGATCCATTGCGTCTGATAACAGACTTTGGATATACTTCCTTCAGACCCATCAGGCTGAACCTTGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGTTCTGGCTACCCTCTTCCAGCATACGTTGGTCACTGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATTATTGATGGTGGTTCTGGCTACTGCAAATTTGGCTGGAGCAAATACGAATGTCCATCTGGTCGATCAGCAACATTTTTGGAGTTTGGTAACATTGAGTCTCCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCAAATAAACAACCAGTTATTGTTTCGGTACCAATATGTCATTATGAAGATACTCAATCTGCAAAAGCTTCAAGACAACAGCTTAAAGAGGCAATCTACGCATCTTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTACGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACTTCTATTGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAGCTTACAGGATTTCTCAGGGAGAAGATGCAGTTGAACAACTTAACTTTTCAATCTTTGTATACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTAAAGGATACAAACGCATCATATGAGGCTGCAGGAGAAGGATTTACCCTCTCAAAAGAGAGGTTTCAGACAGCAGAGGTCTTATTCAAGCCTCATTTTGCTGGAGTGCAAGCCATGGGTCTGCACCAAGCAATAGCTCTTTGTGTGAAACATTGCCATTTTGCAGATTTACCAGGTGACAATGATTGGTACAAGACTATAGTTTTATCAGGGGGCACTGCATGCCTACCTGGTTTGGCTGAGAGGGTAGAGAAGGAACTCCATACCTTACTTCCTCCCTACATGTTCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACGCCATGGTTTGGAGCTAAGATTATTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGTGACAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAGCCTCATATGGTGA 1440 0.4306 MSMLLRKAWDMVLWRSDSSPSSSSSSSISTATTTATRFSLEVAHSDMGELEQLPSDILMQILKLLGPKAVAKLSVVCKSLRSIASDNRLWIYFLQTHQAEPWDSVFFAETTLSSGYPLPAYVGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYECPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYEDTQSAKASRQQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLTFQSLYTVRTLKEKLCYVALDYEAELLKDTNASYEAAGEGWXTLSKERFQTAEVLFKPHFAGVQAMGLHQAIALCVKHCHFADLPGDNDWYKTIVLSGGTACLPGLAERVEKELHTLLPPYMFNGIRVIPPPYGADTPWFGAKIIGNLSTFPGHWCVXKKQFRQKPRLSLIW 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00054 481 SUPERFAMILY Actin-like ATPase domain 257 465 IPR043129 -
Viun1g00054 481 SUPERFAMILY F-box domain 45 110 IPR036047 GO:0005515
Viun1g00054 481 PANTHER ACTIN 185 471 IPR004000 -
Viun1g00054 481 Gene3D - 187 473 - -
Viun1g00054 481 Gene3D - 248 446 - -
Viun1g00054 481 CDD NBD_sugar-kinase_HSP70_actin 144 288 - -
Viun1g00054 481 Gene3D Actin; Chain A, domain 4 291 374 - -
Viun1g00054 481 SUPERFAMILY Actin-like ATPase domain 143 263 IPR043129 -
Viun1g00054 481 SMART actin_3 141 471 IPR004000 -
Viun1g00054 481 ProSiteProfiles F-box domain profile. 47 93 IPR001810 GO:0005515
Viun1g00054 481 Pfam F-box domain 51 91 IPR001810 GO:0005515
Viun1g00054 481 Gene3D - 41 116 - -
Viun1g00054 481 SMART fbox_2 53 93 IPR001810 GO:0005515
Viun1g00054 481 Pfam Actin 190 471 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00054 Viun-Chr1 447812 456416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00054 190 477 Cytoskeleton Gene Families AT3G12110 33.108 4.17e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00054 K16616 - gmx:100791973 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00054 1 447812 456416 Viun1g00054 1 447812 456416 ECH