Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00023 ATGGAGTCTGGTCCTCCTCCCAACGATCTCTGCTCAATCTGCCATGCCAACTTTCACATTCCCTGTCAAGCAAATTGCTCTCACTGGTTTTGTGCAAATTGCATCATGCTCGTGTGGCAGCACGCATCAGGGACAAGCTCCTGCAAATGCCCTCTCTGTCGCCGACCCATCACTCTCTTAGTCCCCACCGAACACTCTCTCTCCCACCGTCACGACCCTGAAGTTGCTCATATTCTCTCCAAGATTCATGCTTACAACCGTGTCTTCGGTGGCCAACCCTCCTCTCTTTTTCAGAGAGTGCAAGATCTTCCTTTTCTGTTGCACAGGCTGCTTCGGGAGTTTCTGAACCCTCAAAGATCCCTTCCTCTTGTCATCCGTGCCCGTGTCTTTGTTGCTATGATAGCAAGTGTTGTATACATTCTCAGCCCAATTGATCTCATTCCTGAAGCGATGTTAGGAATAGTTGGTCTCTTAGATGATGTGTTAATTGGGCTGATCTGCTTCCTACATGTTGCTGCCATTTATAGATCAGTTCTTTACCTCCGTCATGCTGGTTCCTGA 561 0.4848 MESGPPPNDLCSICHANFHIPCQANCSHWFCANCIMLVWQHASGTSSCKCPLCRRPITLLVPTEHSLSHRHDPEVAHILSKIHAYNRVFGGQPSSLFQRVQDLPFLLHRLLREFLNPQRSLPLVIRARVFVAMIASVVYILSPIDLIPEAMLGIVGLLDDVLIGLICFLHVAAIYRSVLYLRHAGS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00023 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 90 IPR013083 -
Viun1g00023 186 ProSiteProfiles Zinc finger RING-type profile. 11 54 IPR001841 -
Viun1g00023 186 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Viun1g00023 186 SUPERFAMILY RING/U-box 8 62 - -
Viun1g00023 186 PANTHER UNCHARACTERIZED 3 183 IPR038896 GO:0061630
Viun1g00023 186 CDD RING-HC_RNF113A_B 5 62 - -
Viun1g00023 186 SMART ring_2 11 53 IPR001841 -
Viun1g00023 186 Pfam Protein of unknown function (DUF1232) 131 163 IPR010652 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00023 Viun-Chr1 268312 270104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00023 36 186 C3H Transcription Factor Family AT1G72175 68.212 2.49e-62 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00023 K15707 - gmx:100306204 320.087