Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00022 ATGGAGTCTGGTCCTCCTCCCAACGATCTCTGCTCAATCTGCCATGCCAACTTTCACATTCCCTGTCAAGCAAATTGCTCTCACTGGTTTTGTGCAAATTGCATCATGCTCGTGTGGCAGCACGCATCAGGGACAAGCTCCTGCAAATGCCCTCTCTGTCGCCGACCCATCACTCTCTTAGTCCCCACCGAACACTCTCTCTCCCACCGTCACGACCCTGAAGTTGCTCATATTCTCTCCAAGATTCATGCTTACAACCGTGTCTTCGGTGGCCAACCCTCCTCTCTTTTTCAGAGAGTGCAAGATCTTCCTTTTCTGTTGCACAGGCTGCTTCGGGAGTTTCTGAACCCTCAAAGATCCCTTCCTCTTGTCATCCGTGCCCGTGTCTTTGTTGCTGTCAGTTTCCTCACTCTTTCAACTTCAATACTTGCTGTGTTCCTCAATCGATTATCCATGATAGCAAGTGTTGTATACATTCTCAGCCCAATTGATCTCATTCCTGAAGCGATGTTAGGAATAGTTGGTCTCTTAGATGATGTGTTAATTGGGCTGATCTGCTTCCTACATGTTGCTGCCATTTATAGATCAGTTCTTTACCTCCGTCATGCTGGTTCCTGA 618 0.4773 MESGPPPNDLCSICHANFHIPCQANCSHWFCANCIMLVWQHASGTSSCKCPLCRRPITLLVPTEHSLSHRHDPEVAHILSKIHAYNRVFGGQPSSLFQRVQDLPFLLHRLLREFLNPQRSLPLVIRARVFVAVSFLTLSTSILAVFLNRLSMIASVVYILSPIDLIPEAMLGIVGLLDDVLIGLICFLHVAAIYRSVLYLRHAGS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00022 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 89 IPR013083 -
Viun1g00022 205 ProSiteProfiles Zinc finger RING-type profile. 11 54 IPR001841 -
Viun1g00022 205 PANTHER UNCHARACTERIZED 3 202 IPR038896 GO:0061630
Viun1g00022 205 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Viun1g00022 205 SUPERFAMILY RING/U-box 8 62 - -
Viun1g00022 205 CDD RING-HC_RNF113A_B 5 62 - -
Viun1g00022 205 Pfam Protein of unknown function (DUF1232) 149 182 IPR010652 -
Viun1g00022 205 SMART ring_2 11 53 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00022 Viun-Chr1 268305 270104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00022 36 205 C3H Transcription Factor Family AT1G72175 60.588 8.56e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00022 K15707 - gmx:100306204 308.531