Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00009 ATGTGGGTAGAGTCCTCTATTCTAATGGAAGATCGGCGGAGAAAGCACGGCGGAAGGTCGGCGAAGAGGGAATCTAATCATTTTCTGAAGGTCATACTTCCCTCTGCTATTCATGCTAACCAAACGAGAATTCCCGAGGAATTTATAAAGAGATTTGGAAATGAACTATCAACTGTTGCTACAATTACTGTTCCTGATGGTTGTGTTTGGAAAATGAGGTTGGAGAAATGTGGTAAAGATGTTTTCTTCGGCAGCGAATGGCGAGAGTTTGTAAACTACTATTCTCTAGGGTATGGTTCCCACCTAATTTTCAGATATGTCGGGAACTCAAAATTTCGTGTTCTTATATTTGATATTACTGCTGCTGAGATTTGTTATCCTCGCCAAACTCGGGGCACTAATGAACCAAACTCGGCGAATTGGAAGAGGTCCAAGTTTGAGAATGAGCAGCACGACGGCCATGAAACAAAAAAGAAAGAGCTTATGGTGGGGAATGGGGTAGCAACTGGTGATGAAGATGATGTGAATTTAATACGTCCGAGTGGGGCTAAGGTAAGGAAGAGAAAAGGTGATTTTTCTCATGGGAAACAAGTCAAAAGTGGATGCAGAGGAAATCACTCTTCTTGGGAGATAGGAAAGCATGTTGCTACTCCTAGTGATAGATTGATGCCAAGAAACCCTTTTGTTACTTGTACCATCAAGTCTTCTCGATTGTATGTGTCAACTGAATTTGCTTGCAAGTATCTGAAGCCAGGTGTTGGTATGATGCTCCAAAATAGTAACGGAGAGCAGTGGAATGTTTCTTGCTCATGTCATAGCCGTAGCAGAGCATTAATAATATCGAGGGGATGGGCTAAATTTATGAGGGACAACGATCTATCAGAAGGAGATCTATGCATGTTGGAGTTGATGAAGAGGGACCCCATTGTGCTAAGATTGACTTTGCATGGCAAAGCTCAATTAATATTATGA 972 0.4187 MWVESSILMEDRRRKHGGRSAKRESNHFLKVILPSAIHANQTRIPEEFIKRFGNELSTVATITVPDGCVWKMRLEKCGKDVFFGSEWREFVNYYSLGYGSHLIFRYVGNSKFRVLIFDITAAEICYPRQTRGTNEPNSANWKRSKFENEQHDGHETKKKELMVGNGVATGDEDDVNLIRPSGAKVRKRKGDFSHGKQVKSGCRGNHSSWEIGKHVATPSDRLMPRNPFVTCTIKSSRLYVSTEFACKYLKPGVGMMLQNSNGEQWNVSCSCHSRSRALIISRGWAKFMRDNDLSEGDLCMLELMKRDPIVLRLTLHGKAQLIL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00009 323 Pfam B3 DNA binding domain 28 118 IPR003340 GO:0003677
Viun1g00009 323 Pfam B3 DNA binding domain 233 308 IPR003340 GO:0003677
Viun1g00009 323 Gene3D - 19 121 IPR015300 -
Viun1g00009 323 ProSiteProfiles B3 DNA-binding domain profile. 255 319 IPR003340 GO:0003677
Viun1g00009 323 CDD B3_DNA 232 307 IPR003340 GO:0003677
Viun1g00009 323 SMART B3_2 28 120 IPR003340 GO:0003677
Viun1g00009 323 SMART B3_2 228 319 IPR003340 GO:0003677
Viun1g00009 323 Gene3D - 213 317 IPR015300 -
Viun1g00009 323 SUPERFAMILY DNA-binding pseudobarrel domain 226 306 IPR015300 -
Viun1g00009 323 PANTHER B3 DOMAIN-CONTAINING 22 306 - -
Viun1g00009 323 SUPERFAMILY DNA-binding pseudobarrel domain 23 119 IPR015300 -
Viun1g00009 323 CDD B3_DNA 27 118 IPR003340 GO:0003677
Viun1g00009 323 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00009 Viun-Chr1 157786 159532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00009 28 314 B3 DNA Binding Superfamily AT3G18990 28.916 1.54e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun1g00009 B3 2.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00009 - - vun:114183160 671.003