Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03074 ATGACATCCAATAATCCTTTGGATATCATGGACGACGAGGAGTTTGATTGGGAAGCAGCTGCTAGAGAAATCGACGTTGTTTGCCAGATGGCGAGTGACGCACAGAGAAAGGGAGAGCAGCAATCGGCTCTCAAGAAGGAATCCCCAACACCGCAGTTCGAAGAAGATGGCGAAAACCCTACCTTTGTCCACCACATCGATGCCGAGGCAGCCAAAACCTGGATATATCCGGTTAATGTTCCTCTCCGTGACTATCAATTTGATATTACCCAGTCCGCACTCTTCTCCAACACATTGGTGGCCTTGCCAACGGGACTTGGCAAAACACTCATTGCTGCAGTTGTCATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCCGCTCCTTCTCGGCCACTCGTCATGCAGCAGATCGAAGCTTGCCACAATATTGTTGGAATACCTCAAGAATGGACAGTTGATATGACTGGTCAGCTAAGTCCCCCCAAAAGGGCTCAATTTTGGAAAAAGAAGCGAGTATTCTTTGTCACTCCTCAAGTATTAGAAAAGGATATTCATTCTGGTACATGTTTGGTGAAGTACTTGGTATGTTTGGTCATTGATGAAGCTCATAGAGCAATGGGAAATTACGCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCGGCACAGCTGAGAATATTAGCGTTAACTGCAACACCGGGATCCAAGCAACAAACAGTTCAGGCTGTCATTGATAATCTGCATATCTCCAGACTTGATTATCGGAGCGAAACTGACCATGATGTTATGTCATATGTTCACAATAGGAAGATAGAATTGATACAGGTTACGATGGGCCCAGAAGCTGTAGAAATAAATAATAAGTTTATGGAAGCAATACGCCCTATAGTAGCGAGGCTTACAAATATTGGTGTCATTCAGAACAGAGATTACCGCACTTTGAGCCCTTGTCAATTACTTGAAATTAGGGAAAATTTTCGTCAAAGGCTTAGGCAAGATCTTTCTCGTGTCAACTATGAAGATGTTGAAGGATATTTTGGAGTTCTCATCACTCTTTATTACATCCATAAGTTACTTTCAAGCCATGGAATAAGGCCAGCATACGAGATGCTTGAGAGAAAATTGAAGCAAGGATATTTTGCAAAATTTATGAGTAAAAGTGAAGTTATTCTGAAAGCAAGGCAACTAATGCAGCAAAGTTTGTCTCATGGAGCATCCAGTCCAAAATTGTCCAAAATGCTAGAAGTATTGCTGGAACATTTCAAAACCAACGATCCACAAAGCTCCAGGGTAATTATCTTCTCCAATTACAGAGAAAGTGTCAGGGATATAATGAATGCACTTAAAGATATTAGGGAATTAGTTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAGGTTCAACAGGCTGTGCTGACGAAATTTCGGTCTGGCACCTATAATGTCATTGTTGCCACATCAATTGGTGAAGAAGGTCTTGACATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAGTTGTAGTTTTTGCTTGTGAAGGGACTGAGTTGAAGGGCTACTTGCGAAAACAGGCAAAGAGCAAAACTATAAATAAACACATGCGCAATGGGGGCCTAAATAGTTTTTCCTTTCATCCTAGTCCAAGGATGATTCCTCACGTCTTCAAACCGGAAGTTCAATATGTTGAACTGTCCATTGAGAAATTTATTCCCCGTCAAAAGAATGTGAAGGATGACGAGCTCCACATTTCTCCATCGAAGGACAAACTCACTGTGGCTGAAATTGATTTACTTGAAACGTATTTTCACCCTACTGGGGAAAACAATTGTAGAATCTCTCTTATTGCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTTAAGCATTCATCTGGAACATTAATGTTTATAGACATGATGCAGCGTATGCAAGGACTAGCATCATTTCCAAAAGATGACAAAACTTCTTCACTTCAGGAAGATCTCTGCTTGGGACATAGGAAGCCTGTCGCCCCTATCAAACTTGATAAAGCTAATATGGACAGTGAATCATGCTTTACGCATGCATTGAGAACGAGTGTAGACTCTGTTAATTGTCTGGACCTGGATTCGTGTCATTTGGGCATTCAAAGCAAAGACTTCGTTGATCTAACTTGGCAAGAAGAAACATGTGAGGGTGATGAGGCAATTCACGAGACTCCAATGTATAAGAGAAATGCATGCATTAATGACATGAAAGATGAAGAACTTAGTCCACGTTTAACGAATTTCATTAAAAGTGGTGTAGTTCCCGAGTCTCCCATTGATGAAAGAGGGAACTCAGGATTACATTCTGTCATATGCGACTATATTTTACCTGTCAGTGTCCACAAAGAACAGAATGTTAGTTCTTTAAGCTCAGGGGAAACTAAAATGGTCGACAATGAAAAGGGCACCGATAAGAATGTCTGTACTTCCTCTTTCAATGAAACTCAAAGCCCGTTGCTTGACTTGAAGAATTGTACAATTAGAAGAGGACGAGTCTTTCTTTCCCAAACTGAGGAAGGCCGTGTACATAACTCTGACCTAAGCCTCAGTGAAGAAGGGCTTCCAGCAGATTGTGGTGAAATGTCTGAAAGCGTTAAACCTTCACGTAAATTTAAAAGGCTGCGAAAAGCTGAAGATACTGAAAGCAATAGGAATCAGAAAAATATTAAATTTTTTGATTCAACAGTGAACTTTCTCAAGTCATCTCATGCCTCCAATCCCGCACAATATAAGCATGGACGAGGTAAAAGGAAATCAACATACAATGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGGCGAGGATGATAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACGGCAGTCAGTCAGCCTGAAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAAGCACCGCGGAATGGAGCGCTTGATTTTTCTGCCACCTTCACTCCCGACCGTGTGACTATGGCAGCCAGTACCAGTGAAAGTGGGGATTCTTCAGGGAAGTCATTCAATCATTTCCATACAGAGGCAACCAAAGAGTCAGCAAATCGGACTTCGGAATCCATTAGCATCGACCAGACAACCTCAGAAGCAGTGTTTTCAAGTTGTTGTCCTATGGGAAATGGGACAGAGATAAAAAGTCACAAACGAAGATTGTCGTTTTACCACTCTGAACACTTCCCGAGTATGAACCTTGAACAAGAATTTGCTCTTGAATCAAAGAAAGAAGTGGGGGATGTCGATGCAACTACAAATGTATTGTGTGATGATCAGTTTTATAATGATCTCGATCTTGACGAGTTGGAGGCGAAAGCAACTTTGCTTCTAAAACGGAAATTAGATTTGTCCATTCAGAAGCAAGATAAGGTCTCTCAATCTCACTTACCCAACCTTGATATTTTTGGGTCTCCTTCATTTGACCTGGGGATATGA 3627 0.4147 MTSNNPLDIMDDEEFDWEAAAREIDVVCQMASDAQRKGEQQSALKKESPTPQFEEDGENPTFVHHIDAEAAKTWIYPVNVPLRDYQFDITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRAQFWKKKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVRELMAVPAQLRILALTATPGSKQQTVQAVIDNLHISRLDYRSETDHDVMSYVHNRKIELIQVTMGPEAVEINNKFMEAIRPIVARLTNIGVIQNRDYRTLSPCQLLEIRENFRQRLRQDLSRVNYEDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGYFAKFMSKSEVILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQSSRVIIFSNYRESVRDIMNALKDIRELVRATEFIGQSSGKAMKGQSQKVQQAVLTKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVFACEGTELKGYLRKQAKSKTINKHMRNGGLNSFSFHPSPRMIPHVFKPEVQYVELSIEKFIPRQKNVKDDELHISPSKDKLTVAEIDLLETYFHPTGENNCRISLIAFPHFQTFPSRVHKVKHSSGTLMFIDMMQRMQGLASFPKDDKTSSLQEDLCLGHRKPVAPIKLDKANMDSESCFTHALRTSVDSVNCLDLDSCHLGIQSKDFVDLTWQEETCEGDEAIHETPMYKRNACINDMKDEELSPRLTNFIKSGVVPESPIDERGNSGLHSVICDYILPVSVHKEQNVSSLSSGETKMVDNEKGTDKNVCTSSFNETQSPLLDLKNCTIRRGRVFLSQTEEGRVHNSDLSLSEEGLPADCGEMSESVKPSRKFKRLRKAEDTESNRNQKNIKFFDSTVNFLKSSHASNPAQYKHGRGKRKSTYNVRDFIEEEAEVSSDAYVSNDEDGEDDNSFDSFIDDRTNPTAVSQPEASRMDMMAIYRRSLLSQAPRNGALDFSATFTPDRVTMAASTSESGDSSGKSFNHFHTEATKESANRTSESISIDQTTSEAVFSSCCPMGNGTEIKSHKRRLSFYHSEHFPSMNLEQEFALESKKEVGDVDATTNVLCDDQFYNDLDLDELEAKATLLLKRKLDLSIQKQDKVSQSHLPNLDIFGSPSFDLGI 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03074 1208 CDD SF2_C_FANCM_Hef 413 545 - -
Viun11g03074 1208 Gene3D - 78 272 IPR027417 -
Viun11g03074 1208 MobiDBLite consensus disorder prediction 980 1015 - -
Viun11g03074 1208 MobiDBLite consensus disorder prediction 39 59 - -
Viun11g03074 1208 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 257 IPR014001 -
Viun11g03074 1208 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 10 1192 - -
Viun11g03074 1208 MobiDBLite consensus disorder prediction 887 934 - -
Viun11g03074 1208 FunFam Fanconi anemia, complementation group M 77 272 - -
Viun11g03074 1208 Pfam Helicase conserved C-terminal domain 422 538 IPR001650 -
Viun11g03074 1208 CDD DEXDc_FANCM 80 261 IPR044749 GO:0005524
Viun11g03074 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 552 IPR027417 -
Viun11g03074 1208 CDD FANCM_ID 289 403 IPR039686 GO:0006281|GO:0043138
Viun11g03074 1208 MobiDBLite consensus disorder prediction 32 59 - -
Viun11g03074 1208 Gene3D hef helicase domain 286 409 - -
Viun11g03074 1208 MobiDBLite consensus disorder prediction 911 934 - -
Viun11g03074 1208 FunFam ATP-dependent RNA helicase, putative 403 573 - -
Viun11g03074 1208 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 586 IPR001650 -
Viun11g03074 1208 SMART ultradead3 78 278 IPR014001 -
Viun11g03074 1208 MobiDBLite consensus disorder prediction 983 999 - -
Viun11g03074 1208 Pfam Type III restriction enzyme, res subunit 95 239 IPR006935 GO:0003677|GO:0005524|GO:0016787
Viun11g03074 1208 SMART helicmild6 448 539 IPR001650 -
Viun11g03074 1208 Gene3D - 410 569 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03074 Viun-Chr11 41625907 41637302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03074 370 537 Eukaryotic Initiation Factors Gene Family AT3G13920 25.824 6.92e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03074 K10896 - gmx:100820078 1748.02