Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03070 ATGGCTTTCTGGGGAGTGGAAGTGAAACCGGGAAAGCCTTTTACTCATAAATACGAGGATTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTTGGGTTGGGCACTGCGACAGCTAAAAGCACACTCCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAACGCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGTTCTTTTCTCTGTAATTGGCCCTCGGAGCATTCATCTCTGCGGGTACTATCTCGCCACTGCCCGCAACGCCAATCTTATTGATGATTCTGAATCATATGGGGAGGATATCGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGATGGGTATGAAGATAGTTTTATTGACGATGACATTGTTCCAGAGGCTTCCTCACCATCTCTTATTTCCAAAGAAGAGGAAGCTTCTCATGACAACGGACCAAAAATTAGGAAAGGCAGTCTTCGACGGCTTAGGAAGATGTACCGGTCAGGCGAGTCAGATGATGATGGCTGTGGCGGAGAAAAGATAATTGTCGATGACAGAATGCATGACCAAAACCAGGAAACTGACAATGAAGATAGCCTACCCATTTCATCTCTTTACAAGAATAAAGCCTCTGGAAGGGTCTTGGACAAAGAAGTGGATGCTAGTGTCGTCAGAGGAGCTGGTTATGCCAGCAACAAGAATGGGGGTGGAAATAATATTTTTGAAACAAATCTAGAGGCTGGACATGTCCTTGTAGATAGTCAGACACAAAGGGAAGCTGTGCCATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATATTAAAAGTCCAAAGAAGAAAAAGAAGAAAAAGGAAAAAGGGACAAAGAGTTCCTGTAATGGCCATTCTATCAAACTAGATAATGTTATAGATGAGCTAAAAATCGAAGAGATGAACCAGGTTGTTGTGGCAGGAGGGAAACAAGAGCAGCATGTTGATGATATGGAAACTGAGACCACAGATAAAATACTGCCTTCCTCTCAGGTTGATCATGGACTGGGTGAAAAGCCAAAGAAGAAAAGAAAAGAAAGATCTAAAGAGGGGATGGTTTCAATTGCTACTGATGGTTATCAAAACAGTCTTGTTAATCTGCCTCTAAGAAATGAACAGCACACAGTTAATGAGGATGTTAAAATTTCAGGCAATGTTGCATTGTCTTCTGCTGAGATGGATCCTAAAAAGAATAGAGCAAAGAGGAAAAAGAAAGAACAAGTAAACAAAAGTGACGATGGATATAATGAAGATATCTTCCAAGAGGACAAGGTCAACAGAGATGCAGCAGGGTCACAGAATGCGATTCCTAATTTTTTTGAAGAAAAAGAGCAGCATCAGAAGCGAACTAATGAGAAGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCGGAGAATAGAAAAGTTAAGAAAAGGAAGAAAATGAGTAAAAGTCAGGGCAATGGGGAAGTTGTAAATTCTAATGTAGCTGTATATGTTGAGCGAAGTGGTGAGACTGAGATGGAGGAGGACAGAAGTAAGGGGGATAATGCAAAACCCTCCAATGTTAGAACATTGACAAATGGACTAGTTATTCAGGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTGTCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATCGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACACTGACGTCTGAGAGTGATGGACACTCTGACAAAATACCACAAAATTCATGGTTGATTTATGACATTGAACTTGTTAAAGTTCATTGA 1971 0.416 MAFWGVEVKPGKPFTHKYEDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGNAESLQLNLELEEVDQVLFSVIGPRSIHLCGYYLATARNANLIDDSESYGEDIADTETERSDYSDEDGYEDSFIDDDIVPEASSPSLISKEEEASHDNGPKIRKGSLRRLRKMYRSGESDDDGCGGEKIIVDDRMHDQNQETDNEDSLPISSLYKNKASGRVLDKEVDASVVRGAGYASNKNGGGNNIFETNLEAGHVLVDSQTQREAVPSKHLVDPCTSLDVGDIKSPKKKKKKKEKGTKSSCNGHSIKLDNVIDELKIEEMNQVVVAGGKQEQHVDDMETETTDKILPSSQVDHGLGEKPKKKRKERSKEGMVSIATDGYQNSLVNLPLRNEQHTVNEDVKISGNVALSSAEMDPKKNRAKRKKKEQVNKSDDGYNEDIFQEDKVNRDAAGSQNAIPNFFEEKEQHQKRTNEKMVDNGAYDLPDGNQSENRKVKKRKKMSKSQGNGEVVNSNVAVYVERSGETEMEEDRSKGDNAKPSNVRTLTNGLVIQEQEKGKKDGKIAASGKKISIYYTGKLKENGAVFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPQNSWLIYDIELVKVH 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03070 656 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Viun11g03070 656 Gene3D - 520 656 IPR046357 GO:0003755
Viun11g03070 656 MobiDBLite consensus disorder prediction 466 509 - -
Viun11g03070 656 MobiDBLite consensus disorder prediction 114 168 - -
Viun11g03070 656 MobiDBLite consensus disorder prediction 332 373 - -
Viun11g03070 656 MobiDBLite consensus disorder prediction 417 446 - -
Viun11g03070 656 MobiDBLite consensus disorder prediction 358 373 - -
Viun11g03070 656 Gene3D Nucleoplasmin core domain 1 99 - -
Viun11g03070 656 MobiDBLite consensus disorder prediction 523 544 - -
Viun11g03070 656 MobiDBLite consensus disorder prediction 114 138 - -
Viun11g03070 656 SUPERFAMILY FKBP-like 518 655 - -
Viun11g03070 656 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 564 653 IPR001179 GO:0003755
Viun11g03070 656 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 568 656 IPR001179 GO:0003755
Viun11g03070 656 MobiDBLite consensus disorder prediction 281 308 - -
Viun11g03070 656 MobiDBLite consensus disorder prediction 151 165 - -
Viun11g03070 656 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 376 - -
Viun11g03070 656 MobiDBLite consensus disorder prediction 523 538 - -
Viun11g03070 656 MobiDBLite consensus disorder prediction 410 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03070 Viun-Chr11 41607644 41615086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03070 567 653 Calmodulin-binding Proteins AT5G48570 42.045 1.46e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03070 K14826 - gmx:100798135 758.059