Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03061 ATGACTTCGCAGCTTCCGTGTAACAGTGAGGGCGCCTGCATGCAGTGCAAGGCCGTGCCGGGAGAGGAAGAGACCCTGATATGCATCACCTGCAACAGTCCTTGGCACCTCCCATGCCTGTCCTCCCCTCCGGCCACACTTGCAGCCACCGTTCACTGGTCCTGTCCTGACTGCTCCGATATCAATCCTCATCCTTCACCCCTCCCTTCTCCCCTTTGCAATGACCTCGTCACCGCAATGCTTGCCATTGAAAACGACGATTCTCTCACCCAAACTCAGAAAGCCAAGAAACGCCAGCAACTCATGACTGGAAAAGCTCCTGCACAAGACGAGGACGAGGAAGAGGAAGAAGAAGAAGAGAACGAGACCCAATCCACAAATGTTTGGGATATGGTCTCTCGATCTATCAAATGCTCCATCTGCCTCCAGTTACCGGAGAGGCCCGTCACGACTCCATGTGGTCACAGTTTCTGTCTGAAGTGTTTCCAGAAATGGGTTCGACAAGGAAAGAAGAACTGTGTCCAGTGCCGCCAGCTTGTTCCGGCAAAGTTTACAAGCCAGCCCCGGATCAATTCTGCATTGGTGTTTGCAATTCGCATGGCCAGGACCAATTCTAACCCTAATCTTGGAGTCGATGGAACTGTCAACCATTTCTGGCACAATCAGGACAGACCCGATGAGCCGTTTACCACTGAACGTGCTCAGAGGAAGGGCCGTGCCAATGCGGCCAGTGGAAAAATATTTGTGACCGTGCCTACAGATCATTTTGGTCCAATCACTGCAGAACATGACCCCATGAGGAATCAGGGTCTGCTGGTGGGTGAAAGTTGGAGAGACAGACTGGAATGCAGACAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATAGCTGGTCAGTCAGATCGAGGTGCTCAATCTGTTGTCCTTTCTGGTGGTTATGTGGATGACGAAGATCATGGAGAGTGGTTTCTCTACACCGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGCAGTTCGAGAAGTACAACCTTGCACTTCAAGTTAGCTGTCTTAAGGGTTATCCGGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCTCCCCCGACTGGCGTGCGCTACGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCAGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCAGCCCCCTGGACAAGTGATGATCGTGGAGATAGGCCCAGACCCTTACCGGGCATCCGTGAACTGAAAAAGGCCACCATCACATTTGAAAGGACTGAATCTCCGTCTTGGGATTTTGATGAAGAAGATTCTTGTTGGAAGTGGAAGAAACCACCACCTCCCAGCAAACGAAAGGTGCAAAGTGAGGAACCCATAGAGGGAGTAAGGGCAATGTCAACTAGGGAGACGACGAAGTTTCAACTTGAGATACTCAAGAAAAAATTGCACATAGGGTTCGCGTGCATGATATGCGAGAAGGTTATGGTTTCACCGGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGATAAATTTGCTGGTCAGGCTTTGGTGAGGGAGAGAAGCAGGGGCGGGAGAACGCTTCGGTCCCAAAAAATTGTGATACCATGTCCTTCTTGCCCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTAATGTACATTTGAAGGATGCGATTGAGTCACTGAAAGCCAATGTTGCAAATATTGAAAAGTCGCTGGAGTCAACTGAAGATGCAGCAGATGGATTAGATGACAATACTGATTCAGGCAACCAAAATTCGGCAAAGGAGTTGAACGATCTATCTGAAGGATCTGATGTTGGTGAGCTTGAGGACACCGATAATGAGAGGCCACATCCAGAAGTAACAAGCACAAGAAAGAGACAGAAAGGTGATGATGAAACACAATCACCTGATGCTAAAATTGGAAAAAGGATTAAATAA 2034 0.4843 MTSQLPCNSEGACMQCKAVPGEEETLICITCNSPWHLPCLSSPPATLAATVHWSCPDCSDINPHPSPLPSPLCNDLVTAMLAIENDDSLTQTQKAKKRQQLMTGKAPAQDEDEEEEEEEENETQSTNVWDMVSRSIKCSICLQLPERPVTTPCGHSFCLKCFQKWVRQGKKNCVQCRQLVPAKFTSQPRINSALVFAIRMARTNSNPNLGVDGTVNHFWHNQDRPDEPFTTERAQRKGRANAASGKIFVTVPTDHFGPITAEHDPMRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQQFEKYNLALQVSCLKGYPVRVVRSHKEKRSSYAPPTGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDRGDRPRPLPGIRELKKATITFERTESPSWDFDEEDSCWKWKKPPPPSKRKVQSEEPIEGVRAMSTRETTKFQLEILKKKLHIGFACMICEKVMVSPVTTPCAHNFCKSCLEDKFAGQALVRERSRGGRTLRSQKIVIPCPSCPIDISDYLQNIQVNVHLKDAIESLKANVANIEKSLESTEDAADGLDDNTDSGNQNSAKELNDLSEGSDVGELEDTDNERPHPEVTSTRKRQKGDDETQSPDAKIGKRIK 677
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03061 677 ProSiteProfiles Zinc finger RING-type profile. 138 177 IPR001841 -
Viun11g03061 677 SUPERFAMILY RING/U-box 137 188 - -
Viun11g03061 677 FunFam Predicted protein 92 203 - -
Viun11g03061 677 MobiDBLite consensus disorder prediction 91 126 - -
Viun11g03061 677 Pfam SAD/SRA domain 269 417 IPR003105 -
Viun11g03061 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 598 IPR013083 -
Viun11g03061 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 204 IPR013083 -
Viun11g03061 677 SMART PHD_3 12 59 IPR001965 -
Viun11g03061 677 MobiDBLite consensus disorder prediction 109 124 - -
Viun11g03061 677 ProSiteProfiles Zinc finger RING-type profile. 512 568 IPR001841 -
Viun11g03061 677 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 4 604 IPR045134 -
Viun11g03061 677 Pfam RING-type zinc-finger 512 543 IPR027370 -
Viun11g03061 677 Gene3D - 237 432 IPR036987 -
Viun11g03061 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 61 IPR013083 -
Viun11g03061 677 Pfam Zinc finger, C3HC4 type (RING finger) 138 176 IPR018957 GO:0046872
Viun11g03061 677 SUPERFAMILY FYVE/PHD zinc finger 3 65 IPR011011 -
Viun11g03061 677 Coils Coil 582 616 - -
Viun11g03061 677 ProSitePatterns Zinc finger PHD-type signature. 13 58 IPR019786 -
Viun11g03061 677 ProSiteProfiles YDG domain profile. 266 414 IPR003105 -
Viun11g03061 677 SMART G9a_1 261 418 IPR003105 -
Viun11g03061 677 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 237 432 - -
Viun11g03061 677 SMART Ubox_2 135 193 IPR003613 GO:0004842|GO:0016567
Viun11g03061 677 SUPERFAMILY RING/U-box 509 593 - -
Viun11g03061 677 SUPERFAMILY PUA domain-like 240 434 IPR015947 -
Viun11g03061 677 CDD RING-HC_ORTHRUS_rpt1 135 181 IPR047498 -
Viun11g03061 677 ProSitePatterns Zinc finger RING-type signature. 527 536 IPR017907 -
Viun11g03061 677 MobiDBLite consensus disorder prediction 606 677 - -
Viun11g03061 677 MobiDBLite consensus disorder prediction 615 630 - -
Viun11g03061 677 MobiDBLite consensus disorder prediction 641 677 - -
Viun11g03061 677 SMART ring_2 512 568 IPR001841 -
Viun11g03061 677 SMART ring_2 138 176 IPR001841 -
Viun11g03061 677 SMART ring_2 13 58 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun11g03061 Viun-Chr11 41561929 41565850 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03061 1 603 C2H2 Transcription Factor Family AT5G39550 55.810 0.0 676
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03061 K10638 - gmx:100801535 1046.96