Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun11g03061 | ATGACTTCGCAGCTTCCGTGTAACAGTGAGGGCGCCTGCATGCAGTGCAAGGCCGTGCCGGGAGAGGAAGAGACCCTGATATGCATCACCTGCAACAGTCCTTGGCACCTCCCATGCCTGTCCTCCCCTCCGGCCACACTTGCAGCCACCGTTCACTGGTCCTGTCCTGACTGCTCCGATATCAATCCTCATCCTTCACCCCTCCCTTCTCCCCTTTGCAATGACCTCGTCACCGCAATGCTTGCCATTGAAAACGACGATTCTCTCACCCAAACTCAGAAAGCCAAGAAACGCCAGCAACTCATGACTGGAAAAGCTCCTGCACAAGACGAGGACGAGGAAGAGGAAGAAGAAGAAGAGAACGAGACCCAATCCACAAATGTTTGGGATATGGTCTCTCGATCTATCAAATGCTCCATCTGCCTCCAGTTACCGGAGAGGCCCGTCACGACTCCATGTGGTCACAGTTTCTGTCTGAAGTGTTTCCAGAAATGGGTTCGACAAGGAAAGAAGAACTGTGTCCAGTGCCGCCAGCTTGTTCCGGCAAAGTTTACAAGCCAGCCCCGGATCAATTCTGCATTGGTGTTTGCAATTCGCATGGCCAGGACCAATTCTAACCCTAATCTTGGAGTCGATGGAACTGTCAACCATTTCTGGCACAATCAGGACAGACCCGATGAGCCGTTTACCACTGAACGTGCTCAGAGGAAGGGCCGTGCCAATGCGGCCAGTGGAAAAATATTTGTGACCGTGCCTACAGATCATTTTGGTCCAATCACTGCAGAACATGACCCCATGAGGAATCAGGGTCTGCTGGTGGGTGAAAGTTGGAGAGACAGACTGGAATGCAGACAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATAGCTGGTCAGTCAGATCGAGGTGCTCAATCTGTTGTCCTTTCTGGTGGTTATGTGGATGACGAAGATCATGGAGAGTGGTTTCTCTACACCGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGCAGTTCGAGAAGTACAACCTTGCACTTCAAGTTAGCTGTCTTAAGGGTTATCCGGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCTCCCCCGACTGGCGTGCGCTACGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCAGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCAGCCCCCTGGACAAGTGATGATCGTGGAGATAGGCCCAGACCCTTACCGGGCATCCGTGAACTGAAAAAGGCCACCATCACATTTGAAAGGACTGAATCTCCGTCTTGGGATTTTGATGAAGAAGATTCTTGTTGGAAGTGGAAGAAACCACCACCTCCCAGCAAACGAAAGGTGCAAAGTGAGGAACCCATAGAGGGAGTAAGGGCAATGTCAACTAGGGAGACGACGAAGTTTCAACTTGAGATACTCAAGAAAAAATTGCACATAGGGTTCGCGTGCATGATATGCGAGAAGGTTATGGTTTCACCGGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGATAAATTTGCTGGTCAGGCTTTGGTGAGGGAGAGAAGCAGGGGCGGGAGAACGCTTCGGTCCCAAAAAATTGTGATACCATGTCCTTCTTGCCCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTAATGTACATTTGAAGGATGCGATTGAGTCACTGAAAGCCAATGTTGCAAATATTGAAAAGTCGCTGGAGTCAACTGAAGATGCAGCAGATGGATTAGATGACAATACTGATTCAGGCAACCAAAATTCGGCAAAGGAGTTGAACGATCTATCTGAAGGATCTGATGTTGGTGAGCTTGAGGACACCGATAATGAGAGGCCACATCCAGAAGTAACAAGCACAAGAAAGAGACAGAAAGGTGATGATGAAACACAATCACCTGATGCTAAAATTGGAAAAAGGATTAAATAA | 2034 | 0.4843 | MTSQLPCNSEGACMQCKAVPGEEETLICITCNSPWHLPCLSSPPATLAATVHWSCPDCSDINPHPSPLPSPLCNDLVTAMLAIENDDSLTQTQKAKKRQQLMTGKAPAQDEDEEEEEEEENETQSTNVWDMVSRSIKCSICLQLPERPVTTPCGHSFCLKCFQKWVRQGKKNCVQCRQLVPAKFTSQPRINSALVFAIRMARTNSNPNLGVDGTVNHFWHNQDRPDEPFTTERAQRKGRANAASGKIFVTVPTDHFGPITAEHDPMRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQQFEKYNLALQVSCLKGYPVRVVRSHKEKRSSYAPPTGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDRGDRPRPLPGIRELKKATITFERTESPSWDFDEEDSCWKWKKPPPPSKRKVQSEEPIEGVRAMSTRETTKFQLEILKKKLHIGFACMICEKVMVSPVTTPCAHNFCKSCLEDKFAGQALVRERSRGGRTLRSQKIVIPCPSCPIDISDYLQNIQVNVHLKDAIESLKANVANIEKSLESTEDAADGLDDNTDSGNQNSAKELNDLSEGSDVGELEDTDNERPHPEVTSTRKRQKGDDETQSPDAKIGKRIK | 677 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun11g03061 | 677 | ProSiteProfiles | Zinc finger RING-type profile. | 138 | 177 | IPR001841 | - | |
Viun11g03061 | 677 | SUPERFAMILY | RING/U-box | 137 | 188 | - | - | |
Viun11g03061 | 677 | FunFam | Predicted protein | 92 | 203 | - | - | |
Viun11g03061 | 677 | MobiDBLite | consensus disorder prediction | 91 | 126 | - | - | |
Viun11g03061 | 677 | Pfam | SAD/SRA domain | 269 | 417 | IPR003105 | - | |
Viun11g03061 | 677 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 471 | 598 | IPR013083 | - | |
Viun11g03061 | 677 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 204 | IPR013083 | - | |
Viun11g03061 | 677 | SMART | PHD_3 | 12 | 59 | IPR001965 | - | |
Viun11g03061 | 677 | MobiDBLite | consensus disorder prediction | 109 | 124 | - | - | |
Viun11g03061 | 677 | ProSiteProfiles | Zinc finger RING-type profile. | 512 | 568 | IPR001841 | - | |
Viun11g03061 | 677 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 4 | 604 | IPR045134 | - | |
Viun11g03061 | 677 | Pfam | RING-type zinc-finger | 512 | 543 | IPR027370 | - | |
Viun11g03061 | 677 | Gene3D | - | 237 | 432 | IPR036987 | - | |
Viun11g03061 | 677 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 61 | IPR013083 | - | |
Viun11g03061 | 677 | Pfam | Zinc finger, C3HC4 type (RING finger) | 138 | 176 | IPR018957 | GO:0046872 | |
Viun11g03061 | 677 | SUPERFAMILY | FYVE/PHD zinc finger | 3 | 65 | IPR011011 | - | |
Viun11g03061 | 677 | Coils | Coil | 582 | 616 | - | - | |
Viun11g03061 | 677 | ProSitePatterns | Zinc finger PHD-type signature. | 13 | 58 | IPR019786 | - | |
Viun11g03061 | 677 | ProSiteProfiles | YDG domain profile. | 266 | 414 | IPR003105 | - | |
Viun11g03061 | 677 | SMART | G9a_1 | 261 | 418 | IPR003105 | - | |
Viun11g03061 | 677 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 237 | 432 | - | - | |
Viun11g03061 | 677 | SMART | Ubox_2 | 135 | 193 | IPR003613 | GO:0004842|GO:0016567 | |
Viun11g03061 | 677 | SUPERFAMILY | RING/U-box | 509 | 593 | - | - | |
Viun11g03061 | 677 | SUPERFAMILY | PUA domain-like | 240 | 434 | IPR015947 | - | |
Viun11g03061 | 677 | CDD | RING-HC_ORTHRUS_rpt1 | 135 | 181 | IPR047498 | - | |
Viun11g03061 | 677 | ProSitePatterns | Zinc finger RING-type signature. | 527 | 536 | IPR017907 | - | |
Viun11g03061 | 677 | MobiDBLite | consensus disorder prediction | 606 | 677 | - | - | |
Viun11g03061 | 677 | MobiDBLite | consensus disorder prediction | 615 | 630 | - | - | |
Viun11g03061 | 677 | MobiDBLite | consensus disorder prediction | 641 | 677 | - | - | |
Viun11g03061 | 677 | SMART | ring_2 | 512 | 568 | IPR001841 | - | |
Viun11g03061 | 677 | SMART | ring_2 | 138 | 176 | IPR001841 | - | |
Viun11g03061 | 677 | SMART | ring_2 | 13 | 58 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun11g03061 | Viun-Chr11 | 41561929 | 41565850 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun11g03061 | 1 | 603 | C2H2 Transcription Factor Family | AT5G39550 | 55.810 | 0.0 | 676 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun11g03061 | K10638 | - | gmx:100801535 | 1046.96 |