Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03056 ATGCAACCCAAATCCGCCGCCAGACTCTCCAGCTTCCGCTCAACTCCGGCCTCCTGGTTAGAATCAGTTCTTTTGAAAGAGGAGGACGAAGAAGAAGAAGTAGAAGAAGAAGAAAGCCAAGAAGCTGAAGAAGAGCCCTTGAGCTTTACCCAGTTGCTTTCTACAATCGCAGCTCCCTCTCCTTCCCAACGCTATGACACACAGGATTACCCTCCCACCCCCATGCCCGTGCCCATGTCCATCCCCAATTCTATCGCAACCAAGGAACTTTATGCTTCTGCATCTGACATCAAAATGGACACCATGTTCACGTTTGAGGACTCGGTACCCTGTAGAGTTCGGGCAAAGCGCGGCTGTGCTACGCATCCCAGGAGTATCGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTTCCAAACATGGATAAGCAAACAAACACTGCAGATATGTTGGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAAACAAATTGAGACTCTTGAAACACTGCAGGAACTGACAGAGCACCAACGGAGATGCAGATGTATGGTTCAAGAATAA 588 0.4864 MQPKSAARLSSFRSTPASWLESVLLKEEDEEEEVEEEESQEAEEEPLSFTQLLSTIAAPSPSQRYDTQDYPPTPMPVPMSIPNSIATKELYASASDIKMDTMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIETLETLQELTEHQRRCRCMVQE 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03056 195 Coils Coil 159 186 - -
Viun11g03056 195 MobiDBLite consensus disorder prediction 25 44 - -
Viun11g03056 195 MobiDBLite consensus disorder prediction 21 51 - -
Viun11g03056 195 FunFam Transcription factor bHLH130 family 120 194 - -
Viun11g03056 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 184 IPR036638 GO:0046983
Viun11g03056 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 169 IPR011598 GO:0046983
Viun11g03056 195 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 183 - -
Viun11g03056 195 CDD bHLH_AtbHLH_like 124 177 IPR045239 -
Viun11g03056 195 Gene3D - 120 192 IPR036638 GO:0046983
Viun11g03056 195 Coils Coil 20 45 - -
Viun11g03056 195 SMART finulus 125 175 IPR011598 GO:0046983
Viun11g03056 195 Pfam Helix-loop-helix DNA-binding domain 124 170 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03056 Viun-Chr11 41534571 41537904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03056 92 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 73.077 2.15e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g03056 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03056 - - vun:114169578 310.457