Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03055 ATGCAACCCAAATCCGCCGCCAGACTCTCCAGCTTCCGCTCAACTCCGGCCTCCTGGTTAGAATCAGTTCTTTTGAAAGAGGAGGACGAAGAAGAAGAAGTAGAAGAAGAAGAAAGCCAAGAAGCTGAAGAAGAGCCCTTGAGCTTTACCCAGTTGCTTTCTACAATCGCAGCTCCCTCTCCTTCCCAACGCTATGACACACAGGATTACCCTCCCACCCCCATGCCCGTGCCCATGTCCATCCCCAATTCTATCGCAACCAAGGAACTTTATGCTTCTGCATCTGACATCAAAATGGACACCATGTTCACGTTTGAGGACTCGGTACCCTGTAGAGTTCGGGCAAAGCGCGGCTGTGCTACGCATCCCAGGAGTATCGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTTCCAAACATGGATAAGCAAACAAACACTGCAGATATGTTGGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAAACAAATTGAGGTACTCTTCTTTGAGTGGCTGCTATACGCTTGTAACTTTAATTTCGCTCTGGAGTTTTCTCACACAGAACTGACAGAGCACCAACGGAGATGCAGATGTATGGTTCAAGAATAA 636 0.4796 MQPKSAARLSSFRSTPASWLESVLLKEEDEEEEVEEEESQEAEEEPLSFTQLLSTIAAPSPSQRYDTQDYPPTPMPVPMSIPNSIATKELYASASDIKMDTMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIEVLFFEWLLYACNFNFALEFSHTELTEHQRRCRCMVQE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03055 211 Pfam Helix-loop-helix DNA-binding domain 124 170 IPR011598 GO:0046983
Viun11g03055 211 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 176 - -
Viun11g03055 211 MobiDBLite consensus disorder prediction 25 44 - -
Viun11g03055 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 183 IPR036638 GO:0046983
Viun11g03055 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 169 IPR011598 GO:0046983
Viun11g03055 211 Coils Coil 20 45 - -
Viun11g03055 211 CDD bHLH_AtbHLH_like 124 176 IPR045239 -
Viun11g03055 211 SMART finulus 125 175 IPR011598 GO:0046983
Viun11g03055 211 FunFam Transcription factor bHLH130 family 120 186 - -
Viun11g03055 211 Gene3D - 120 179 IPR036638 GO:0046983
Viun11g03055 211 MobiDBLite consensus disorder prediction 21 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03055 Viun-Chr11 41534566 41537904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03055 92 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 62.500 3.15e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g03055 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03055 - - vun:114169578 382.489